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Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Caulobacter crescentus NA1000  

Data for CP001340  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001340.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001340_2565 CDS_2716669-2719197 95.8 7.9e-27 1
CP001340_2750 CDS_2914843-2912771 94.7 1.6e-26 2
CP001340_2943 CDS_3106648-3104687 94.7 1.6e-26 1
CP001340_3169 CDS_3331879-3329327 92.2 8e-26 1
CP001340_3198 CDS_3361634-3359910 91.6 1.2e-25 1
CP001340_1114 CDS_1220490-1222292 90.9 1.9e-25 1
CP001340_0981 CDS_1063988-1062171 88.1 1.2e-24 1
CP001340_2585 CDS_2738253-2736340 87.6 1.7e-24 1
CP001340_2713 CDS_2875196-2877277 87.4 1.9e-24 1
CP001340_3292 CDS_3464572-3466500 86.1 4.3e-24 1
CP001340_0967 CDS_1045882-1044122 85.6 6.2e-24 1
CP001340_0758 CDS_820510-818810 85.0 9.3e-24 1
CP001340_3064 CDS_3219470-3217329 84.3 1.5e-23 1
CP001340_3081 CDS_3233052-3231328 81.8 7.6e-23 1
CP001340_0687 CDS_745305-747635 81.3 9.9e-23 1
CP001340_1113 CDS_1220338-1219547 81.1 1.1e-22 1
CP001340_0291 CDS_304469-305884 80.8 1.4e-22 1
CP001340_0621 CDS_666944-669151 77.8 9.9e-22 1
CP001340_3086 CDS_3236908-3238782 76.7 2.1e-21 1
CP001340_0137 CDS_148530-146986 76.3 2.7e-21 1
CP001340_1350 CDS_1465744-1463957 75.3 5e-21 1
CP001340_3323 CDS_3506595-3508568 75.2 5.6e-21 1
CP001340_0026 CDS_29403-26701 73.6 1.6e-20 2
CP001340_3596 CDS_3750296-3752605 68.6 4e-19 1
CP001340_2604 CDS_2753765-2751246 67.0 1.1e-18 1
CP001340_1664 CDS_1787056-1789734 67.0 1.2e-18 1
CP001340_3736 CDS_3907410-3909197 66.1 2.1e-18 1
CP001340_0238 CDS_253207-254811 62.6 2e-17 1
CP001340_1775 CDS_1903369-1905099 58.4 3.2e-16 1
CP001340_1814 CDS_1941312-1943555 49.9 8.3e-14 1
CP001340_1812 CDS_1938708-1939829 48.5 2e-13 1
CP001340_2976 CDS_3132879-3134357 46.2 8.8e-13 1
CP001340_0794 CDS_861095-859581 43.5 5.2e-12 1
CP001340_2965 CDS_3122732-3125179 43.0 7.5e-12 1
CP001340_3025 CDS_3181645-3182982 42.1 1.3e-11 1
CP001340_3330 CDS_3514662-3512269 36.7 4.4e-10 1
CP001340_2407 CDS_2552018-2553811 34.6 1.7e-09 1
CP001340_0248 CDS_260914-259514 34.5 1.8e-09 1
CP001340_1130 CDS_1235738-1237813 31.6 1.2e-08 1
CP001340_1237 CDS_1365904-1364477 29.9 3.7e-08 1
CP001340_0562 CDS_578467-579972 27.6 1.7e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001340_2565 1/1 600 669 .. 1 87 [] 95.8 7.9e-27
CP001340_2943 1/1 276 341 .. 1 87 [] 94.7 1.6e-26
CP001340_2750 1/2 320 385 .. 1 87 [] 93.7 3.2e-26
CP001340_3169 1/1 464 529 .. 1 87 [] 92.2 8e-26
CP001340_3198 1/1 199 264 .. 1 87 [] 91.6 1.2e-25
CP001340_1114 1/1 331 399 .. 1 87 [] 90.9 1.9e-25
CP001340_0981 1/1 222 287 .. 1 87 [] 88.1 1.2e-24
CP001340_2585 1/1 265 331 .. 1 87 [] 87.6 1.7e-24
CP001340_2713 1/1 319 385 .. 1 87 [] 87.4 1.9e-24
CP001340_3292 1/1 265 330 .. 1 87 [] 86.1 4.3e-24
CP001340_0967 1/1 208 273 .. 1 87 [] 85.6 6.2e-24
CP001340_0758 1/1 200 265 .. 1 87 [] 85.0 9.3e-24
CP001340_3064 1/1 340 405 .. 1 87 [] 84.3 1.5e-23
CP001340_3081 1/1 198 263 .. 1 87 [] 81.8 7.6e-23
CP001340_0687 1/1 410 476 .. 1 87 [] 81.3 9.9e-23
CP001340_1113 1/1 37 106 .. 1 87 [] 81.1 1.1e-22
CP001340_0291 1/1 201 268 .. 1 87 [] 80.8 1.4e-22
CP001340_0621 1/1 370 436 .. 1 87 [] 77.8 9.9e-22
CP001340_3086 1/1 249 314 .. 1 87 [] 76.7 2.1e-21
CP001340_0137 1/1 16 78 .. 4 87 .] 76.3 2.7e-21
CP001340_1350 1/1 360 426 .. 1 87 [] 75.3 5e-21
CP001340_3323 1/1 276 341 .. 1 87 [] 75.2 5.6e-21
CP001340_0026 1/2 527 592 .. 1 87 [] 71.9 4.8e-20
CP001340_3596 1/1 540 606 .. 1 87 [] 68.6 4e-19
CP001340_2604 1/1 475 540 .. 1 87 [] 67.0 1.1e-18
CP001340_1664 1/1 660 728 .. 1 87 [] 67.0 1.2e-18
CP001340_3736 1/1 216 281 .. 1 87 [] 66.1 2.1e-18
CP001340_0238 1/1 299 364 .. 1 87 [] 62.6 2e-17
CP001340_1775 1/1 219 276 .. 1 87 [] 58.4 3.2e-16
CP001340_1814 1/1 506 577 .. 1 87 [] 49.9 8.3e-14
CP001340_1812 1/1 136 200 .. 1 87 [] 48.5 2e-13
CP001340_2976 1/1 251 317 .. 1 87 [] 46.2 8.8e-13
CP001340_0794 1/1 269 340 .. 1 87 [] 43.5 5.2e-12
CP001340_2965 1/1 452 518 .. 1 87 [] 43.0 7.5e-12
CP001340_3025 1/1 241 299 .. 1 87 [] 42.1 1.3e-11
CP001340_3330 1/1 425 493 .. 1 87 [] 36.7 4.4e-10
CP001340_2407 1/1 217 283 .. 1 87 [] 34.6 1.7e-09
CP001340_0248 1/1 238 301 .. 1 87 [] 34.5 1.8e-09
CP001340_1130 1/1 312 378 .. 1 87 [] 31.6 1.2e-08
CP001340_1237 1/1 272 329 .. 1 87 [] 29.9 3.7e-08
CP001340_0562 1/1 263 327 .. 1 87 [] 27.6 1.7e-07

Alignments of top-scoring domains:
CP001340_2565: domain 1 of 1, from 600 to 669: score 95.8, E = 7.9e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI g++e++ +e++ ++l+++
CP001340_2 600 AKSEFLANMSHELRTPLNAINGFSEIMMNEMF------GPLGDQR-- 638

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ y + i++++++ll+Lind+Ld+s+ieag
CP001340_2 639 ---------YKGYSQDIHSSGQHLLALINDILDMSKIEAG 669

CP001340_2943: domain 1 of 1, from 276 to 341: score 94.7, E = 1.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTPL++++g+ae+L + t+l++ q
CP001340_2 276 AKSEFLANMSHEIRTPLNGVIGMAEVLSR---------TALDDAQ-- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ e+il++++ l+ L++d+Ldls+ieag
CP001340_2 312 ----------REMMEVILNSGRALNLLLSDILDLSKIEAG 341

CP001340_2750: domain 1 of 2, from 320 to 385: score 93.7, E = 3.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHE+RTPL++++++a +L e t+l+++q
CP001340_2 320 AKNDFLANMSHEIRTPLNGVIALAAALDE---------TPLTSKQ-- 355

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ i+r++e l+rL++d+Ld s+ieag
CP001340_2 356 ----------AEMVAMIRRSGETLERLVSDILDVSKIEAG 385

CP001340_3169: domain 1 of 1, from 464 to 529: score 92.2, E = 8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla +sHELRTPL++++g+a++L+ + l++ q
CP001340_3 464 AKSAFLAVMSHELRTPLNGMLGLAQALRS---------DQLTPAQ-- 499

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ il++++ ll L+nd+Ldls+ieag
CP001340_3 500 ----------REQVDLILDSGDTLLVLLNDILDLSKIEAG 529

CP001340_3198: domain 1 of 1, from 199 to 264: score 91.6, E = 1.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHELRTP+++++g+a++L+ t+l+++q
CP001340_3 199 AKSAFLAMMSHELRTPMNGVLGLAHALRG---------TKLDAQQ-- 234

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyle i+++++ l ++nd+Ldls+ieag
CP001340_3 235 ----------SEYLEMIEQSGHGLMTILNDILDLSKIEAG 264

CP001340_1114: domain 1 of 1, from 331 to 399: score 90.9, E = 1.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +flan+sHELRTPL+aI+g++++++++++ ++ls+
CP001340_1 331 GRARFLANMSHELRTPLNAIMGFSDIMRARMF------GPLSDRY-- 369

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey e i++++ +ll+Lind+Ld+s+iea+
CP001340_1 370 ----------AEYAELIHESGGHLLDLINDVLDMSKIEAE 399

CP001340_0981: domain 1 of 1, from 222 to 287: score 88.1, E = 1.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTPL++++g+a+++ ++l +q
CP001340_0 222 AKSEFLATMSHEIRTPLNGVLGMAQIMAS---------GKLQVDQ-- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ leti ++++ll Lin +Ld srie g
CP001340_0 258 ----------RRRLETITASGQSLLGLINTILDVSRIEDG 287

CP001340_2585: domain 1 of 1, from 265 to 331: score 87.6, E = 1.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+ HELRTPLtaI+g+ae+L++ + +l+
CP001340_2 265 AKSDFLANMTHELRTPLTAIIGFAEVLRR--------SRNLNKTA-- 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + il++++ ll+ +nd+Ld+sr+eag
CP001340_2 302 ----------ARQVGHILDASNTLLSVVNDVLDFSRLEAG 331

CP001340_2713: domain 1 of 1, from 319 to 385: score 87.4, E = 1.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHE+RTPL++++g+a+lL + +++l+++
CP001340_2 319 AKTEFLATMSHEIRTPLNSVLGFAQLLAA--------REDLPPDA-- 355

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++ i++++ ll ++d+Ld+sr eag
CP001340_2 356 ----------RRQVNLIDSAGAALLTVVDDILDFSRVEAG 385

CP001340_3292: domain 1 of 1, from 265 to 330: score 86.1, E = 4.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHE+RTP+++++g ++lL++ ++ls++
CP001340_3 265 TKSQFLANMSHEIRTPMNGVLGVLHLLKT---------EKLSDDG-- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l +l+++e l++L+nd+ d+s+ieag
CP001340_3 301 ----------RRLLTEALSCGEMLSALLNDIIDFSKIEAG 330

CP001340_0967: domain 1 of 1, from 208 to 273: score 85.6, E = 6.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks f+a sHELRTP+++++g+a++L++ ++l++ q
CP001340_0 208 AKSTFIAVTSHELRTPMNGLLGMAHALQR---------STLDPVQ-- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + +++++++l +L+nd+Ldlsr e+g
CP001340_0 244 ----------REQIALMIKSGDSLMQLLNDVLDLSRVETG 273

CP001340_0758: domain 1 of 1, from 200 to 265: score 85.0, E = 9.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla +sHELRTPL++++g++++L+ ++l + +
CP001340_0 200 AKSEFLALMSHELRTPLNGMLGLSQALKL---------EPLEPGE-- 235

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re +e ++++++ ll+L+nd+Ld+++ieag
CP001340_0 236 ----------REQVELLEESGRTLLALLNDVLDMAKIEAG 265

CP001340_3064: domain 1 of 1, from 340 to 405: score 84.3, E = 1.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+f+an+sHE+RTPL++++++a++L+ ++l++ q
CP001340_3 340 VKSQFVANVSHEIRTPLNGVIALASALRQ---------SALTDRQ-- 375

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++e+i +++ l+++++ lLdl++iea+
CP001340_3 376 ----------REMVEIIVESGTTLESILSALLDLAKIEAE 405

CP001340_3081: domain 1 of 1, from 198 to 263: score 81.8, E = 7.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP++++++++++L + ++l+++q
CP001340_3 198 AKSAFLAMISHEIRTPMNGVLAMTDALSR---------ADLGPDQ-- 233

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++r++e l L+nd+Ld+srieag
CP001340_3 234 ----------ARQTALLKRSGEDLMTLLNDVLDISRIEAG 263

CP001340_0687: domain 1 of 1, from 410 to 476: score 81.3, E = 9.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s flan+sHELRTPLta++g+a l + ++l+e
CP001340_0 410 ARSAFLANMSHELRTPLTAVIGFAALVEG--------LDDLPETA-- 446

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+ +i +++ ll+ ind+L++s++e+g
CP001340_0 447 ----------RDYVGRISTAGKALLSVINDVLEMSKLETG 476

CP001340_1113: domain 1 of 1, from 37 to 106: score 81.1, E = 1.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fl+++sHELRTPL+a++g++e+L el+ ++l+++q
CP001340_1 37 RKRSFLRMVSHELRTPLNAVIGFSEILSQELY------GPLGSPQ-- 75

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yrey ++++++ ll+L+n++ +l+r+e +
CP001340_1 76 ---------YREYATIVHDSGLKLLKLVNQIVELARLEGQ 106

CP001340_0291: domain 1 of 1, from 201 to 268: score 80.8, E = 1.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +flan+sHELRTPL++++g++e+L+ ++++++ ++
CP001340_0 201 TRADFLANASHELRTPLASLSGFIETLRG---------HAKDDPGAR 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++l +aer++rLi+dl+ lsrie +
CP001340_0 239 ----------DKFLAIMLAQAERMSRLIDDLMSLSRIELN 268

CP001340_0621: domain 1 of 1, from 370 to 436: score 77.8, E = 9.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+ HELRTPLt+++g+ae +++ +++ls+
CP001340_0 370 AKSAFLANMTHELRTPLTSVIGFAEQIQA--------EPALSPTV-- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ++i ++ ll+ ind+Ld+s++e+g
CP001340_0 407 ----------RHASDRISAGGRALLSTINDILDFSKLESG 436

CP001340_3086: domain 1 of 1, from 249 to 314: score 76.7, E = 2.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ +la +sHE RTPL+a++g+ae+L + ++l++ q
CP001340_3 249 AKTHLLAVASHEVRTPLNAVLGLAEVLAR---------SPLDATQ-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ +++++ llrL++ +Ld++rie+g
CP001340_3 285 ----------REHVDGVRQAGGMLLRLLSSVLDFARIESG 314

CP001340_0137: domain 1 of 1, from 16 to 78: score 76.3, E = 2.7e-21
*->eflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeL
e la+lsHE+RTPL++++g+a lL++ t+l++eq
CP001340_0 16 EQLATLSHEFRTPLNGVLGMARLLEN---------TKLTAEQ----- 48

RledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+ +++++++ll+L+nd+L ++r++a
CP001340_0 49 -------RSYVTALRESGDHLLSLVNDVLHFARLGAA 78

CP001340_1350: domain 1 of 1, from 360 to 426: score 75.3, E = 5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l ++sHELRTP+taIrg ae+ l+ + +s ++
CP001340_1 360 RRRQLLGDISHELRTPMTAIRGEAEVTLR---------GRKSLDD-- 395

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre+l++i ++ ++ +Li+dlL ++r +a+
CP001340_1 396 ---------YREALQRITLASGQMGALIEDLLMMARSDAE 426

CP001340_3323: domain 1 of 1, from 276 to 341: score 75.2, E = 5.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTPL++++++a+++ + + ls+ q
CP001340_3 276 LKSHFLANMSHEIRTPLNGVLAMADVMAM---------DQLSDIQ-- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l +i++++ ll +nd+Ldls+ieag
CP001340_3 312 ----------RERLAVIRESGAVLLGVLNDVLDLSKIEAG 341

CP001340_0026: domain 1 of 2, from 527 to 592: score 71.9, E = 4.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +flan+sHE+RTP+++++g ++L++ el++ +
CP001340_0 527 AKAQFLANMSHEIRTPMNGVLGVMHVLKR----------ELPPGDS- 562

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ +l +++ l+ L++d+ d+srieag
CP001340_0 563 ----------ASLLNEALAAGQMLSTLLDDVIDISRIEAG 592

CP001340_3596: domain 1 of 1, from 540 to 606: score 68.6, E = 4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ n+s ELRTPLt+I+gy+elL++ + se
CP001340_3 540 LKRDFVGNVSYELRTPLTTIIGYSELLER--------ADGISERG-- 576

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ++ +a +l r i+d+Ld+++i+ag
CP001340_3 577 ----------RNHVAAVRAAATQLARSIDDVLDMAQIDAG 606

CP001340_2604: domain 1 of 1, from 475 to 540: score 67.0, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL+++++ + L e e +++ r
CP001340_2 475 AKSVFLANMSHELRTPLNGVIAIGDRLAE----------EEDPQAR- 510

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ + + ++++ l++ + d+Ld s+ieag
CP001340_2 511 ----------RELASLVTSSGRLLEQVLGDILDVSKIEAG 540

CP001340_1664: domain 1 of 1, from 660 to 728: score 67.0, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s ++ ++sH+LRTPL++++g++ +L +++ ++l + r
CP001340_1 660 FRSALMNSVSHDLRTPLSTVLGASTTLIDYG-------DKLAKPVR- 698

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +i++eaerl+r + +lLd++rie g
CP001340_1 699 ----------EDLVVSIREEAERLNRYVANLLDMTRIEGG 728

CP001340_3736: domain 1 of 1, from 216 to 281: score 66.1, E = 2.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks f+a++sHELRTP++aI++ a L e+ +e+s++ +
CP001340_3 216 AKSAFVAMISHELRTPISAILAGAGRLHSEA-------PEASSKVH- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i +++ ++ L+ndlLd+sr+eag
CP001340_3 255 -------------AQLIADAGGLMRTLLNDLLDFSRLEAG 281

CP001340_0238: domain 1 of 1, from 299 to 364: score 62.6, E = 2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HE+++PLt+Ir ++e+L + ++
CP001340_0 299 AIERFAADVAHEIKNPLTSIRSAIETLDL---------VTEPAAR-- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++++++rl+rL+ d+ sr++a+
CP001340_0 335 ----------ARLLAILQNDVNRLDRLVTDISNASRLDAE 364

CP001340_1775: domain 1 of 1, from 219 to 276: score 58.4, E = 3.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s ++a++sHELRTP++aI a L +++
CP001340_1 219 ARSALIAMVSHELRTPINAIVNGAGRLDAGS---------------- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
i ++++ ++ L+ndlLdls+ieag
CP001340_1 250 -------------AGLIADAGRMMRTLLNDLLDLSKIEAG 276

CP001340_1814: domain 1 of 1, from 506 to 577: score 49.9, E = 8.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae L++++ + + +s+ ++
CP001340_1 506 AWKDVARRIAHEIKNPLTPIQLSAERLRRKY-----RKEIASDLET- 546

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ti+r++ + r+++++ ++r+ a+
CP001340_1 547 ---------FDRCTDTIIRQVGDIGRMVDEFSAFARMPAP 577

CP001340_1812: domain 1 of 1, from 136 to 200: score 48.5, E = 2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +l+HE+++PL++Irg+a+lL++ +s+ +
CP001340_1 136 SVVGLGKMLAHEIKNPLAGIRGAAQLLKT----------GASAVD-- 170

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i +e++r++rL++++ +s
CP001340_1 171 ----------QPLAQLIVDETDRIRRLVDRMEAFSEQAPT 200

CP001340_2976: domain 1 of 1, from 251 to 317: score 46.2, E = 8.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++fl+++ HE+RTPL+a++g+a+++ ++ ++ +
CP001340_2 251 ARRDFLSGINHEFRTPLNAVLGFASVIMG---------AKNTPANV- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ i++++er+l+ +++ + +e+
CP001340_2 288 ----------RQFAGGIHEAGERILAHFEQIQTVKALEQA 317

CP001340_0794: domain 1 of 1, from 269 to 340: score 43.5, E = 5.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++++l+HEL++PL+aI ++ ++ +d+ g+++ ++
CP001340_0 269 AMGEMASTLAHELNQPLSAIANLLTGSRRLMDR---GREADQAKV-- 310

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++++ +a r + i +++d++r +a
CP001340_0 311 ----------RDAIDRAAAQALRAGEVIHRMRDFARRGAS 340

CP001340_2965: domain 1 of 1, from 452 to 518: score 43.0, E = 7.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g++++ ++ ++ ++ r
CP001340_2 452 AIGQLTGGVAHDFNNLLTVIIGALDVVER---------HPDDARRR- 488

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +l +a+r ++L + lL ++r +
CP001340_2 489 ----------ERMIGAALAAAKRGEKLTQHLLAFARRQPL 518

CP001340_3025: domain 1 of 1, from 241 to 299: score 42.1, E = 1.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt +++ +++
CP001340_3 241 QRTALLASVSHDLRTPLTRLKLEMAMAEP------------------ 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e e ++ ++ ++++i++ L ++r e g
CP001340_3 270 ----------CERMEAMKGDLAEMEHMIDEYLAFARGEGG 299

CP001340_3330: domain 1 of 1, from 425 to 493: score 36.7, E = 4.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g e++ ++l + + e
CP001340_3 425 AVGQLTGGLAHDFNNLLAGISGSFEMIGARLA------QGRAGEV-- 463

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl + +a+r +L +lL +sr ++
CP001340_3 464 ----------ERYLTAGQGAARRAAALTHRLLAFSRRQTL 493

CP001340_2407: domain 1 of 1, from 217 to 283: score 34.6, E = 1.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+ +a+lsHE+R+ Lt++ + ++ ++ + ++
CP001340_2 217 SKSDIVATLSHEIRNGLTGVTHVLAAAAG--------RGGRAAPS-- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ +l++a+ l + +n Ld + +e+g
CP001340_2 254 ----------REQLNAALDAAQDLIAVLNATLDSETAESG 283

CP001340_0248: domain 1 of 1, from 238 to 301: score 34.5, E = 1.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HEL TPL++I+ a + + + ++e
CP001340_0 238 ALGALAAAAAHELGTPLATISVVAREMAR---------NAPNDEV-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re e ++ +a r+++++++l + ea
CP001340_0 274 ----------REDAELMIGQAARCREILQRL--TEMPEAT 301

CP001340_1130: domain 1 of 1, from 312 to 378: score 31.6, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI++ ++ Ll +++ +++
CP001340_1 312 AIGQLAGGVAHDFNNLLTAIQLRLDELLH--------RHPVGDPS-- 348

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ i++ + r +L++ lL +sr ++
CP001340_1 349 ----------YEGLNEIRQTGVRAADLVRKLLAFSRKQTV 378

CP001340_1237: domain 1 of 1, from 272 to 329: score 29.9, E = 3.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++ +++H+LRTPLt +++ +e++ e
CP001340_1 272 DRTAMVGAIAHDLRTPLTRLKFRIEAAPE------------------ 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ ++++++++i+ L + r +
CP001340_1 301 -----------DIRPKLAADIDQMEAMISATLGFVRDTNR 329

CP001340_0562: domain 1 of 1, from 263 to 327: score 27.6, E = 1.7e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e +a + H+LR+ Lt+ +++++ L + l+++++
CP001340_0 263 ALGEAVAKINHDLRNMLTSAQMASDRLAA-----------LGDPKV- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++r+++r +L +d++ + + ++
CP001340_0 298 ----------AQALPRLERALDRAINLASDVMAYGKSKEP 327


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 5 0|=
-13 50 2|*===
-12 177 88|======*=======
-11 343 459|=========================== *
-10 691 852|====================================================== *
-9 742 880|==========================================================*
-8 666 659|==================================================*=
-7 494 415|===============================*======
-6 295 239|==================*====
-5 153 131|==========*=
-4 91 70|=====*=
-3 61 37|==*==
-2 27 19|=*=
-1 17 10|*=
0 8 5|*
1 5 2|*
2 3 1|*
3 1 0|=
4 1 0|=
5 1 0|=
6 0 0|
7 1 0|=
8 0 0|
> 9 45 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 232.2702
P(chi-square) = 1.273e-312

Total sequences searched: 3877

Whole sequence top hits:
tophits_s report:
Total hits: 41
Satisfying E cutoff: 41
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 41
Satisfying E cutoff: 41
Total memory: 37K


Acknowledgements:

This research is funded by:

Developed by: