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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Caulobacter crescentus NA1000  

Data for CP001340  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001340.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001340_1205 CDS_1333694-1334875 77.6 1.3e-22 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001340_1205 1/1 202 269 .. 1 70 [] 77.6 1.3e-22

Alignments of top-scoring domains:
CP001340_1205: domain 1 of 1, from 202 to 269: score 77.6, E = 1.3e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RI+R+LHD +g++L+++++++ela+rl+ +d+ +a+++++++
CP001340_1 202 ERERISRDLHDLLGHTLTLVAVKAELAARLV--SRDASAAEREMQAV 246

relarealaevRrllgdLRpaal<-*
+++areal+evR ++ +++ a l
CP001340_1 247 AAAAREALSEVRTAVVGMKGASL 269


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 11 0|=
-13 41 0|====
-12 86 43|===*====
-11 125 355|=========== *
-10 468 824|======================================= *
-9 684 936|========================================================= *
-8 612 721|=================================================== *
-7 546 453|=====================================*========
-6 411 256|=====================*=============
-5 360 137|===========*==================
-4 199 71|=====*===========
-3 121 36|==*========
-2 80 18|=*=====
-1 50 9|*====
0 36 4|*==
1 23 2|*=
2 10 1|*
3 5 0|=
4 2 0|=
5 2 0|=
6 1 0|=
> 7 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1683.3457
P(chi-square) = 0

Total sequences searched: 3877

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: