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Classification of phyla is from NCBI page
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106 projects found  

3 accessions found for Arthrobacter chlorophenolicus A6  

Data for CP001341  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001341.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001341_0795 CDS_864451-862958 94.4 2e-26 1
CP001341_0969 CDS_1075307-1073652 77.6 1.2e-21 1
CP001341_2840 CDS_3214075-3215736 75.8 3.8e-21 1
CP001341_2404 CDS_2747535-2745742 74.0 1.2e-20 1
CP001341_0232 CDS_255365-253674 73.0 2.3e-20 1
CP001341_0841 CDS_920947-922215 71.8 5.2e-20 1
CP001341_0890 CDS_989197-987764 69.6 2.1e-19 1
CP001341_0155 CDS_174184-175398 63.9 8.7e-18 1
CP001341_1688 CDS_1921028-1923577 63.9 8.8e-18 1
CP001341_2830 CDS_3199717-3201267 62.3 2.5e-17 1
CP001341_3407 CDS_3825768-3824530 60.6 7.6e-17 1
CP001341_0708 CDS_761803-760361 42.5 1e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001341_0795 1/1 267 333 .. 1 87 [] 94.4 2e-26
CP001341_0969 1/1 334 398 .. 1 87 [] 77.6 1.2e-21
CP001341_2840 1/1 323 389 .. 1 87 [] 75.8 3.8e-21
CP001341_2404 1/1 319 386 .. 1 87 [] 74.0 1.2e-20
CP001341_0232 1/1 326 394 .. 1 87 [] 73.0 2.3e-20
CP001341_0841 1/1 151 217 .. 1 87 [] 71.8 5.2e-20
CP001341_0890 1/1 229 296 .. 1 87 [] 69.6 2.1e-19
CP001341_0155 1/1 185 253 .. 1 87 [] 63.9 8.7e-18
CP001341_1688 1/1 619 687 .. 1 87 [] 63.9 8.8e-18
CP001341_2830 1/1 285 349 .. 1 87 [] 62.3 2.5e-17
CP001341_3407 1/1 190 258 .. 1 87 [] 60.6 7.6e-17
CP001341_0708 1/1 235 300 .. 1 87 [] 42.5 1e-11

Alignments of top-scoring domains:
CP001341_0795: domain 1 of 1, from 267 to 333: score 94.4, E = 2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a++sHELRTPLtaIrgy+el+++ ++ +++
CP001341_0 267 KVRQFVADASHELRTPLTAIRGYTELMRM--------TEDFTPDG-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ++++++er+ +L++dlL l+r+++g
CP001341_0 304 ----------QKSLARVQSQSERMTALVEDLLLLARLDEG 333

CP001341_0969: domain 1 of 1, from 334 to 398: score 77.6, E = 1.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f++++sHE+RTPLt+I+gy+e+Ll+ +e e q
CP001341_0 334 AKDDFVSSVSHEFRTPLTSILGYVEILLA---------DEPEESQ-- 369

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le+i+r +erll L++d L sr ++
CP001341_0 370 ----------EEMLEIIRRNSERLLTLVSD-LLASRNGQL 398

CP001341_2840: domain 1 of 1, from 323 to 389: score 75.8, E = 3.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+a++sHELRTPLt+I+gy++++ + ++ l++e
CP001341_2 323 AKDQFVASVSHELRTPLTSILGYLSIAMD--------EEGLDPEL-- 359

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le+++r aerll+L+ dlL+++
CP001341_2 360 ----------EHCLEVAKRNAERLLNLVADLLTIASGTLT 389

CP001341_2404: domain 1 of 1, from 319 to 386: score 74.0, E = 1.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHELRTPLt++r++ae+L + +++ ++
CP001341_2 319 MQQRFVSDVSHELRTPLTTVRMAAEVLYD-------ARDDFDPIN-- 356

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e +++++er ++L++dlL++sr +ag
CP001341_2 357 ----------KRSAELLYNQVERFQSLLSDLLEISRFDAG 386

CP001341_0232: domain 1 of 1, from 326 to 394: score 73.0, E = 2.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++ HELRTPLt+I++y+++++e + ++ s+e
CP001341_0 326 AKTDFLATVNHELRTPLTSIMAYLDMIQESTE------QPGSAEI-- 364

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+++ r +erl+ Li+d+L sr +
CP001341_0 365 ----------HQMLDIVVRNTERLRTLIEDMLSVSRNGLD 394

CP001341_0841: domain 1 of 1, from 151 to 217: score 71.8, E = 5.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ aI+++ae+L+ ++ +e +
CP001341_0 151 IRNDFVANVSHELKTPVGAISLLAEALES---------SADDEMAV- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ +++++e+ rl +L++d+ +lsr++
CP001341_0 188 ----------RRFAKRMHKESGRLAALVQDIIELSRLQGA 217

CP001341_0890: domain 1 of 1, from 229 to 296: score 69.6, E = 2.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL +Irg++el + ++l+ ++
CP001341_0 229 RMRRFAADASHELRTPLVTIRGFSELYRH---------GALTTDE-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +i++ea+r+ ++++dlL l+r++++
CP001341_0 265 --------DVATAMGRIESEAKRMGSMVEDLLLLARLDEQ 296

CP001341_0155: domain 1 of 1, from 185 to 253: score 63.9, E = 8.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ef+ +sH+LR+PLt+++gy+el ++ +d+++s++++
CP001341_0 185 LLAEFAGRISHDLRNPLTSVLGYVELGQM-------SDGAASDPDL- 223

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yle++ +++r+l++i+d+L ++ +
CP001341_0 224 ----------AGYLEVAAGSGQRMLSMIEDVLSYATTGGD 253

CP001341_1688: domain 1 of 1, from 619 to 687: score 63.9, E = 8.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l+++sH+LRTPL++Ir+++ +L + ++++ ++e++
CP001341_1 619 IRTSILRAVSHDLRTPLAGIRLAVTALGR-------QRDKTTAEEQ- 657

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ti++ + rl++L+ +lLd+sri++
CP001341_1 658 ----------TEMIDTIDSYSGRLENLVGNLLDMSRIDSD 687

CP001341_2830: domain 1 of 1, from 285 to 349: score 62.3, E = 2.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ ++sHELRTPLt I g+++lL+ + +
CP001341_2 285 DQRQFVDDASHELRTPLTIIGGHLQLLQP----------ADAMDV-- 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +l+e++r+++L+n+lL l+r + +
CP001341_2 320 ----------AETRVLLLEEVDRMQSLVNELLVLARSGRP 349

CP001341_3407: domain 1 of 1, from 190 to 258: score 60.6, E = 7.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++sef+ +sH+LR PLt+I+gy+el+++ d++l ++ +
CP001341_3 190 MLSEFAGRVSHDLRAPLTTILGYVELAED--------DPDLAPDNPA 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl i ++r+l ++d+L ++r++ +
CP001341_3 229 ----------AEYLGLIGTGGRRMLGTLEDVLNYARADGE 258

CP001341_0708: domain 1 of 1, from 235 to 300: score 42.5, E = 1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a++sH+LR+P+ a+r+ +++L+ + ++ +
CP001341_0 235 SQRQLIADASHQLRNPIGALRLRLDVLQL---------ELKTGRE-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ e+er +++++d+L l+ +e+
CP001341_0 271 ----------HDAAASAVAELERVEEILDDVLKLAAAEHR 300


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 1 0|=
-14 9 0|=
-13 35 2|*==
-12 148 88|======*====
-11 383 460|============================ *
-10 668 854|================================================ *
-9 800 882|==========================================================*
-8 684 660|===============================================*=
-7 466 416|=============================*====
-6 302 239|=================*====
-5 176 131|=========*===
-4 91 70|====*==
-3 48 37|==*=
-2 37 19|=*=
-1 13 10|*
0 5 5|*
1 1 2|*
2 0 1|*
3 1 0|=
4 4 0|=
> 5 13 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 164.7518
P(chi-square) = 5.64e-29

Total sequences searched: 3885

Whole sequence top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: