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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

3 accessions found for Arthrobacter chlorophenolicus A6  

Data for CP001341  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001341.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001341_2391 CDS_2728409-2726937 90.7 1.3e-25 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001341_2391 1/1 293 354 .. 1 68 [. 90.7 1.3e-25

Alignments of top-scoring domains:
CP001341_2391: domain 1 of 1, from 293 to 354: score 90.7, E = 1.3e-25
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLr+Q+r+ +ee+ + L+ + +RV++
CP001341_2 293 EIHHRVKNNLQTVAALLRMQSRRMVSEEA-----KQGLEQAMRRVAT 334

mAliHEeLYksedldtvdfse<-*
+Al+HE L+++ +vdf+e
CP001341_2 335 IALVHETLSQGLT-QSVDFDE 354


Histogram of all scores:
score obs exp (one = represents 18 sequences)
----- --- ---
-15 8 0|=
-14 25 0|==
-13 91 24|=*====
-12 230 255|============= *
-11 1041 710|=======================================*==================
-10 879 919|================================================= *
-9 638 776|==================================== *
-8 452 521|========================== *
-7 219 309|============= *
-6 165 172|=========*
-5 53 92|=== *
-4 37 49|==*
-3 21 25|=*
-2 10 13|*
-1 6 7|*
0 5 3|*
1 2 1|*
> 2 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 423.4017
P(chi-square) = 0

Total sequences searched: 3885

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: