hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: CP001344.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 2 0|=
-14 31 0|===
-13 109 0|========
-12 599 0|========================================
-11 625 40|==*=======================================
-10 825 513|==================================*====================
-9 808 1271|====================================================== *
-8 868 1319|==========================================================*
-7 443 886|============================== *
-6 261 483|================== *
-5 176 239|============ *
-4 85 113|====== *
-3 48 52|===*
-2 34 24|=*=
-1 19 11|*=
0 6 5|*
1 4 2|*
2 1 1|*
3 3 0|=
4 3 0|=
5 0 0|
6 2 0|=
7 3 0|=
8 0 0|
9 7 0|=
10 0 0|
11 1 0|=
12 3 0|=
% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 9286.6045
P(chi-square) = 0
Total sequences searched: 4966
Whole sequence top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K
