Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

4 accessions found for Cyanothece sp. PCC 7425  

Data for CP001346  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001346.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001346_0062 CDS_65037-67469 95.2 5.3e-28 1
CP001346_0111 CDS_125898-128198 79.0 2.1e-23 1
CP001346_0057 CDS_60695-62155 60.8 2.8e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001346_0062 1/1 350 416 .. 1 87 [] 95.2 5.3e-28
CP001346_0111 1/1 358 424 .. 1 87 [] 79.0 2.1e-23
CP001346_0057 1/1 139 191 .. 1 73 [. 60.8 2.8e-18

Alignments of top-scoring domains:
CP001346_0062: domain 1 of 1, from 350 to 416: score 95.2, E = 5.3e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHELRTPL+aI+g+a+++++ d+ l+ +q
CP001346_0 350 AKSAFLAHMSHELRTPLNAILGFAQVMER--------DPLLTHQQ-- 386

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l +i r++e+ll Lind+L++s+ieag
CP001346_0 387 ----------QESLAIINRSGEHLLGLINDVLEMSKIEAG 416

CP001346_0111: domain 1 of 1, from 358 to 424: score 79.0, E = 2.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL++I+ +++++ + t+ ++
CP001346_0 358 AKSLFLANMSHELRTPLNVILIMTQMMNR---------TANKIPE-- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey++ i r +++ll++ind+Ldl + ea+
CP001346_0 394 ---------YQEYIDLISRNSDHLLKMINDVLDLFKVEAE 424

CP001346_0057: domain 1 of 1, from 139 to 191: score 60.8, E = 2.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHELRTPL+aI+g+a+l+++ dt l+ q
CP001346_0 139 AKSAFLAHMSHELRTPLNAILGFAQLMER--------DTLLTTAQ-- 175

peLRledpeyreyletilreaerllr<-*
+e l++i r++e+ll+
CP001346_0 176 ----------KESLSIINRSGEHLLE 191


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 5 0|=====
-13 5 0|=====
-12 18 3|==*===============
-11 18 20|================== *
-10 26 37|========================== *
-9 29 39|============================= *
-8 28 29|============================*
-7 18 18|=================*
-6 10 10|=========*
-5 7 5|====*==
-4 1 3|= *
-3 1 1|*
-2 1 0|=
> -1 5 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 6.9050
P(chi-square) = 0.3297

Total sequences searched: 172

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: