Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

8 accessions found for Methylobacterium nodulans ORS 2060  

Data for CP001350  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001350.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001350_0255 CDS_320575-319328 43.1 7e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001350_0255 1/1 209 270 .. 1 87 [] 43.1 7e-13

Alignments of top-scoring domains:
CP001350_0255: domain 1 of 1, from 209 to 270: score 43.1, E = 7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +lan+sHELR PL+ +r++++l + ++
CP001350_0 209 AQRTLLANASHELRSPLARLRMAVDLWSA-------------RPE-- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i r + l +L++++L sr+e+
CP001350_0 241 ----------GSARAEIVRNLAELGALVDEILLSSRLEHA 270


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 2 0|=
-13 10 0|=====
-12 19 9|====*=====
-11 41 47|===================== *
-10 68 88|================================== *
-9 74 91|===================================== *
-8 69 68|=================================*=
-7 46 43|=====================*=
-6 23 24|===========*
-5 19 13|======*===
-4 19 7|===*======
-3 6 3|=*=
-2 2 2|*
-1 0 1|*
> 0 4 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 40.7495
P(chi-square) = 2.322e-06

Total sequences searched: 402

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: