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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

8 accessions found for Methylobacterium nodulans ORS 2060  

Data for CP001351  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: CP001351.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001351_0152 CDS_183393-182143 84.4 1.3e-29 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001351_0152 1/1 222 304 .. 1 85 [] 84.4 1.3e-29

Alignments of top-scoring domains:
CP001351_0152: domain 1 of 1, from 222 to 304: score 84.4, E = 1.3e-29
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
EL+HR +N LAv Q+++ T R ++s+de+ ++F++R+++L+r++ L
CP001351_0 222 ELHHRTRNNLAVLQALFGVTTRASGSVDELYRSFADRIASLARTQAL 268

VpLtrseWagAdLreLleaeLaPyggedaeRitlsGPd<-*
L+++ W+ A+L++ l++e++ + + +R++l+GP+
CP001351_0 269 --LSDDYWQTARLHDMLAHEFEWHIKHRNGRVVLDGPE 304


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 1 0|=
-13 15 0|========
-12 32 0|================
-11 31 3|=*==============
-10 53 42|====================*======
-9 80 104|======================================== *
-8 77 108|======================================= *
-7 38 73|=================== *
-6 22 39|=========== *
-5 34 19|=========*=======
-4 10 9|====*
-3 2 4|=*
-2 6 1|*==
-1 1 0|=
0 3 0|==
1 1 0|=
2 0 0|
> 3 3 -|==


% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 52.8751
P(chi-square) = 1.243e-09

Total sequences searched: 409

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: