Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

8 accessions found for Methylobacterium nodulans ORS 2060  

Data for CP001353  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001353.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001353_0010 CDS_6068-8035 44.8 2.8e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001353_0010 1/1 281 345 .. 1 87 [] 44.8 2.8e-14

Alignments of top-scoring domains:
CP001353_0010: domain 1 of 1, from 281 to 345: score 44.8, E = 2.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ + a+++H++++ Lt+++g+++lL++ ++ee r
CP001353_0 281 ALGGLSAGIAHDFNNLLTVVLGNLDLLRR-----------APEERR- 315

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ + +++e+ ++L ++lL + r ++
CP001353_0 316 ----------ARLIDNAMQAVEQGRKLTQQLLAFGRSQTL 345


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 1 0|=
-13 1 0|=
-12 3 1|*==
-11 8 5|====*===
-10 9 10|=========*
-9 9 10|=========*
-8 6 8|====== *
-7 4 5|====*
-6 0 2| *
> -5 7 -|=======


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 2.0708
P(chi-square) = 0.5579

Total sequences searched: 48

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: