Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
19 projects found  

2 accessions found for Brachyspira hyodysenteriae WA1  

Data for CP001357  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001357.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001357_0918 CDS_1090429-1088690 73.9 8.5e-21 1
CP001357_0266 CDS_304373-305554 37.5 1.7e-10 1
CP001357_1510 CDS_1778780-1780330 35.8 5.5e-10 1
CP001357_1375 CDS_1618870-1617080 30.1 2.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001357_0918 1/1 344 409 .. 1 87 [] 73.9 8.5e-21
CP001357_0266 1/1 156 230 .. 1 87 [] 37.5 1.7e-10
CP001357_1510 1/1 267 333 .. 1 87 [] 35.8 5.5e-10
CP001357_1375 1/1 373 440 .. 1 82 [. 30.1 2.2e-08

Alignments of top-scoring domains:
CP001357_0918: domain 1 of 1, from 344 to 409: score 73.9, E = 8.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f+ n+sHEL+TPLt+I+gy+elL + t + q
CP001357_0 344 EKQDFFINASHELKTPLTSIIGYSELLIA---------TGGGKNQ-- 379

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i +ea r+ +L+ d+L+lsriea+
CP001357_0 380 ----------ADFIKRINNEALRMKDLVIDMLTLSRIEAN 409

CP001357_0266: domain 1 of 1, from 156 to 230: score 37.5, E = 1.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HE+++PL +I+ y++l+ + + +++ e +
CP001357_0 156 SLTTLAAGVAHEIKNPLGSISIYVQLIDK------IIKKNMDNECQ- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ey ++i++e+ rl++ in +L r +
CP001357_0 196 -----CYKDFKEYSDIIKEEISRLEETINSFLFSVRKLEL 230

CP001357_1510: domain 1 of 1, from 267 to 333: score 35.8, E = 5.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ef a++sHELR P t I+gy+ lL++ +++ee+r
CP001357_1 267 LIREFKATVSHELRHPFTEIMGYINLLKK---------NNMPEEKR- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++++ r+++ l + n+l +++ + +
CP001357_1 304 ----------EEFFNIVSRSIKKLYDTNNNLIQIALKDDE 333

CP001357_1375: domain 1 of 1, from 373 to 440: score 30.1, E = 2.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e + ++HE+++PL I+++ael+++ ++t+++++++
CP001357_1 373 TWREAAIKVAHEIKNPLMPIIMNAELIER------KISTNMTDKDVE 413

peLRledpeyreyletilreaerllrLindlLdls<-*
++ ++ ++i++ a+ +++L++ + ++s
CP001357_1 414 KA--------KKSSNIIIKNANVISNLVRSFSEFS 440


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 1 0|=
-14 19 0|===
-13 45 1|*====
-12 163 59|======*============
-11 306 309|==================================*
-10 489 574|======================================================= *
-9 491 593|======================================================= *
-8 396 444|============================================ *
-7 287 280|===============================*
-6 172 161|=================*==
-5 94 88|=========*=
-4 64 47|=====*==
-3 31 24|==*=
-2 17 13|=*
-1 7 6|*
0 5 3|*
1 10 1|*=
2 5 0|=
3 2 0|=
4 0 0|
5 2 0|=
6 1 0|=
7 0 0|
> 8 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 224.0744
P(chi-square) = 1.383e-311

Total sequences searched: 2613

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: