hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001358.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 13 0|==
-13 32 0|=====
-12 65 26|===*======
-11 131 215|=================== *
-10 309 501|============================================= *
-9 411 568|==========================================================*
-8 342 438|================================================= *
-7 275 275|=======================================*
-6 259 156|======================*==============
-5 209 83|===========*==================
-4 127 43|======*============
-3 71 22|===*=======
-2 42 11|=*====
-1 28 5|*===
0 11 2|*=
1 12 1|*=
2 3 0|=
3 5 0|=
4 3 0|=
5 5 0|=
6 2 0|=
7 0 0|
8 0 0|
9 1 0|=
% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 913.4433
P(chi-square) = 0
Total sequences searched: 2356
Whole sequence top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K
