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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S  

Data for CP001363  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001363.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001363_3484 CDS_3126329-3129085 100.2 6.4e-28 1
CP001363_0460 CDS_452247-453542 90.2 4.4e-25 1
CP001363_1648 CDS_1489574-1486812 82.3 7.3e-23 1
CP001363_2740 CDS_2425146-2422300 81.3 1.4e-22 1
CP001363_3923 CDS_3506724-3504388 78.9 6.7e-22 1
CP001363_4512 CDS_4040144-4042879 73.8 1.9e-20 1
CP001363_3074 CDS_2759169-2757727 69.6 2.9e-19 1
CP001363_4757 CDS_4283333-4281960 67.0 1.6e-18 1
CP001363_2568 CDS_2274690-2276093 63.5 1.6e-17 1
CP001363_4880 CDS_4401933-4403414 62.5 2.9e-17 1
CP001363_0798 CDS_770194-767510 61.1 7.7e-17 1
CP001363_4694 CDS_4228908-4227859 60.3 1.3e-16 1
CP001363_5361 CDS_4857755-4859179 59.8 1.7e-16 1
CP001363_1209 CDS_1141988-1140624 57.5 7.9e-16 1
CP001363_3761 CDS_3359706-3361055 55.9 2.3e-15 1
CP001363_4118 CDS_3673507-3672155 54.9 4.3e-15 1
CP001363_5024 CDS_4547251-4546181 47.7 4.8e-13 1
CP001363_1733 CDS_1557683-1556382 47.4 5.6e-13 1
CP001363_3283 CDS_2954009-2952594 36.6 6.5e-10 1
CP001363_2885 CDS_2562056-2560050 35.3 1.6e-09 1
CP001363_1641 CDS_1481325-1483103 31.5 1.8e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001363_3484 1/1 292 357 .. 1 87 [] 100.2 6.4e-28
CP001363_0460 1/1 203 269 .. 1 87 [] 90.2 4.4e-25
CP001363_1648 1/1 395 460 .. 1 87 [] 82.3 7.3e-23
CP001363_2740 1/1 469 534 .. 1 87 [] 81.3 1.4e-22
CP001363_3923 1/1 282 347 .. 1 87 [] 78.9 6.7e-22
CP001363_4512 1/1 444 509 .. 1 87 [] 73.8 1.9e-20
CP001363_3074 1/1 253 321 .. 1 87 [] 69.6 2.9e-19
CP001363_4757 1/1 238 300 .. 1 87 [] 67.0 1.6e-18
CP001363_2568 1/1 240 304 .. 1 87 [] 63.5 1.6e-17
CP001363_4880 1/1 274 340 .. 1 87 [] 62.5 2.9e-17
CP001363_0798 1/1 663 730 .. 1 87 [] 61.1 7.7e-17
CP001363_4694 1/1 129 186 .. 1 79 [. 60.3 1.3e-16
CP001363_5361 1/1 255 320 .. 1 87 [] 59.8 1.7e-16
CP001363_1209 1/1 236 302 .. 1 87 [] 57.5 7.9e-16
CP001363_3761 1/1 236 302 .. 1 87 [] 55.9 2.3e-15
CP001363_4118 1/1 233 293 .. 1 87 [] 54.9 4.3e-15
CP001363_5024 1/1 142 202 .. 1 87 [] 47.7 4.8e-13
CP001363_1733 1/1 211 271 .. 1 87 [] 47.4 5.6e-13
CP001363_3283 1/1 246 311 .. 1 87 [] 36.6 6.5e-10
CP001363_2885 1/1 447 515 .. 1 87 [] 35.3 1.6e-09
CP001363_1641 1/1 357 426 .. 1 87 [] 31.5 1.8e-08

Alignments of top-scoring domains:
CP001363_3484: domain 1 of 1, from 292 to 357: score 100.2, E = 6.4e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ tel++ q
CP001363_3 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TELNPTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll++ind+Ld+s++eag
CP001363_3 328 ----------RDHLNTIERSANNLLAIINDVLDFSKLEAG 357

CP001363_0460: domain 1 of 1, from 203 to 269: score 90.2, E = 4.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e+++e ++l +r
CP001363_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMQE---------QALEGATR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+++++ r++ L+ +lL+ls+iea
CP001363_0 240 ----------EKALHTMREQTYRMEGLVKQLLTLSKIEAA 269

CP001363_1648: domain 1 of 1, from 395 to 460: score 82.3, E = 7.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks l +sHELRTP+++++g++elL++ t+l+ eq
CP001363_1 395 RKSIHLTVISHELRTPMNGVLGAIELLQT---------TPLNIEQ-- 430

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +t+++++ +ll++in+lLd+srie+g
CP001363_1 431 ----------QGLADTARNCTLSLLAIINNLLDFSRIESG 460

CP001363_2740: domain 1 of 1, from 469 to 534: score 81.3, E = 1.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
CP001363_2 469 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPKGV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ + +++ ll++i+d+Ld+s+ie++
CP001363_2 505 ----------ERLVTAMNNSSSLLLKIISDILDFSKIESE 534

CP001363_3923: domain 1 of 1, from 282 to 347: score 78.9, E = 6.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ t+l++eq
CP001363_3 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TDLTAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ ++e
CP001363_3 318 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

CP001363_4512: domain 1 of 1, from 444 to 509: score 73.8, E = 1.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL +I+g+++lL + ++ +
CP001363_4 444 AKSTFLAAMSHEIRTPLYGILGTVQLLAD-----------KPLMT-- 477

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yr+ l+ i +++e+ll+++nd+Ld+s ie g
CP001363_4 478 --------NYRDDLQAINDSGESLLAILNDILDYSAIEVG 509

CP001363_3074: domain 1 of 1, from 253 to 321: score 69.6, E = 2.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl++lsHEL+TPL+++r +elL +++ ++l++eq
CP001363_3 253 QRHQFLRHLSHELKTPLASMREGTELLADQV------VGPLTPEQ-- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++++++ l++Li++lLd+ r
CP001363_3 292 ----------KEVVDILDDSSRNLQKLIEQLLDYNRKLVD 321

CP001363_4757: domain 1 of 1, from 238 to 300: score 67.0, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELRTPLt +++ + lL++ +++
CP001363_4 238 SQQRLLSDISHELRTPLTRLQLGTALLRR---------RGGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
CP001363_4 274 -------------LERIETEAQRLDSMINDLLVMSRNQQK 300

CP001363_2568: domain 1 of 1, from 240 to 304: score 63.5, E = 1.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e++++++ ++e
CP001363_2 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV-------RQFTPES-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
CP001363_2 278 -------------VTSLQAEVGTLTKLVDDLHQLSLSDEG 304

CP001363_4880: domain 1 of 1, from 274 to 340: score 62.5, E = 2.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL++I+g+a+ e +t+++ e
CP001363_4 274 AMGHLAAGVAHEIRNPLSSIKGLAKYFAE--------RTPAGGES-- 310

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +++ +ea+rl+r +++lL+l + +
CP001363_4 311 ----------HELAQVMAKEADRLNRVVSELLELVKPAHL 340

CP001363_0798: domain 1 of 1, from 663 to 730: score 61.1, E = 7.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + +++++
CP001363_0 663 IRNALLAALSHDLRTPLTVLFGQAEILTLDL-------ASAGSPH-- 700

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i++ + rL+n+lLd++ri++g
CP001363_0 701 ----------ARQASEIRQHILNTTRLVNNLLDMARIQSG 730

CP001363_4694: domain 1 of 1, from 129 to 186: score 60.3, E = 1.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP001363_4 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CP001363_4 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

CP001363_5361: domain 1 of 1, from 255 to 320: score 59.8, E = 1.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ + +l HEL+ PL+aIrg+ae+L+e ++ +
CP001363_5 255 EIEQYVYALTHELKSPLAAIRGAAEILRE---------GPPADVV-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e il + r+++L++ lL +r+e+
CP001363_5 291 ----------TRFTENILAQNTRMQALVETLLRQARLENR 320

CP001363_1209: domain 1 of 1, from 236 to 302: score 57.5, E = 7.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +l+HELRTP++ ++g +++l +e+s+e+
CP001363_1 236 RLNQFADDLAHELRTPVNILLGKNQVMLS---------QERSAEE-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l ++e+e l+rL +++L l+r+e++
CP001363_1 272 ---------YQQALVDNIEELEGLSRLTENILFLARAEHQ 302

CP001363_3761: domain 1 of 1, from 236 to 302: score 55.9, E = 2.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a++ +e+++ + ++ r
CP001363_3 236 RERRFTSDAAHELRSPLAALKVQTEVAQL---------SGDDPLSR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++ ++r rL+++lL+lsr+++
CP001363_3 273 ----------DKALTQLHAGIDRATRLVDQLLTLSRLDSL 302

CP001363_4118: domain 1 of 1, from 233 to 293: score 54.9, E = 4.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e e+
CP001363_4 233 DRTLLMAGVSHDLRTPLTRIRLATEMMGE--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
CP001363_4 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

CP001363_5024: domain 1 of 1, from 142 to 202: score 47.7, E = 4.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+++r+++elL + t+
CP001363_5 142 NERLFTADVAHELRTPLSGVRLHLELLSK---------TH------- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++++ + +++lL+l+r ++
CP001363_5 173 ----------NVDVAPLIARLDQMMDSVSQLLQLARVGQS 202

CP001363_1733: domain 1 of 1, from 211 to 271: score 47.4, E = 5.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ ++ l++++
CP001363_1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSEN-----------LTPPE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
CP001363_1 245 -------------SQALNRDIGQLEALIEELLTYARLDRP 271

CP001363_3283: domain 1 of 1, from 246 to 311: score 36.6, E = 6.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a++sH+L+TPL+++++ a ++l+ + + +
CP001363_3 246 RQERFSADASHQLKTPLAVLKTQAAVALA----------SQHPHH-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e l+ + +++ +L ++lL+ls +
CP001363_3 281 ---------WYESLQAMSVTLDSTIQLTERLLQLSAVKHK 311

CP001363_2885: domain 1 of 1, from 447 to 515: score 35.3, E = 1.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l+HE+++PL+a+++y+ ++ + a+++ +s +
CP001363_2 447 VVGQTMTTLAHEINQPLNALSMYLFTAGR------AIEQGQSGQA-- 485

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +++ ++r++++i+ l++++r +
CP001363_2 486 ----------RNTLTKAEGLINRIDAIIRSLRQFTRRAEL 515

CP001363_1641: domain 1 of 1, from 357 to 426: score 31.5, E = 1.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++ +HEL++PL+aIr ya+ +l +l +++e++ l
CP001363_1 357 VLGEMTSGFAHELNQPLSAIRHYAQGCLIRL-------RAADEQHPL 396

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le i+++a+r + +++l+ +g
CP001363_1 397 ----------LPALEQIDQQAQRGADTLRNLRHWVSQAQG 426


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-15 16 0|=
-14 120 0|========
-13 261 3|*================
-12 391 121|=======*=================
-11 637 629|=======================================*
-10 856 1168|====================================================== *
-9 912 1206|========================================================= *
-8 791 903|================================================== *
-7 543 569|================================== *
-6 324 327|====================*
-5 216 179|===========*==
-4 100 96|=====*=
-3 40 50|===*
-2 28 26|=*
-1 25 13|*=
0 14 7|*
1 7 3|*
2 6 1|*
3 2 1|*
> 4 23 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 793.9761
P(chi-square) = 0

Total sequences searched: 5372

Whole sequence top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: