Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
14 projects found  

1 accessions found for Chloroflexus sp. Y-400-fl  

Data for CP001364  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001364.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001364_2634 CDS_3324606-3323464 137.4 6.7e-39 1
CP001364_0280 CDS_349971-347992 76.9 1.1e-21 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001364_2634 1/1 185 269 .. 1 94 [] 137.4 6.7e-39
CP001364_0280 1/1 456 542 .. 1 94 [] 76.9 1.1e-21

Alignments of top-scoring domains:
CP001364_2634: domain 1 of 1, from 185 to 269: score 137.4, E = 6.7e-39
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ++SSLLrLQa++++de v +a ++sqnR+++
CP001364_2 185 EVHHRVKNNLQIVSSLLRLQAENISDERV-----SAAVHDSQNRIRA 226

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
Al+HE+LY+se+l +d++eYl++++ + ++s + +++ ++ l
CP001364_2 227 LALVHEQLYRSESLAHIDIGEYLQNIATSVWRSLSMRGSSLR----L 269

CP001364_0280: domain 1 of 1, from 456 to 542: score 76.9, E = 1.1e-21
*->EIHHRVKNNLQvISSLLrLQarkfk..deevikdEVleaLrEsqnRV
E+HHRV+NNLQ+I++LL++Q r+ ++ ++ + +aLrEs R+
CP001364_0 456 EMHHRVRNNLQTIAALLSMQLRRLDpaSPGA------KALRESAARI 496

lSmAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<
+++A iH+ L++ d++ ++++ + ++e+ ++ +++++++ +
CP001364_0 497 QAIAAIHNLLSRD-DIGVTTVGAVARQVIESVQSTLFESDIRVDFA--I 542

-*

CP001364_0 - -


Histogram of all scores:
score obs exp (one = represents 18 sequences)
----- --- ---
-15 5 0|=
-14 35 0|==
-13 110 26|=*=====
-12 272 273|===============*
-11 1029 760|==========================================*===============
-10 886 984|================================================== *
-9 657 831|===================================== *
-8 528 557|==============================*
-7 242 331|============== *
-6 212 184|==========*=
-5 68 99|==== *
-4 49 52|==*
-3 26 27|=*
-2 12 14|*
-1 14 7|*
0 4 3|*
1 4 2|*
2 2 1|*
> 3 4 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 457.8209
P(chi-square) = 0

Total sequences searched: 4159

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: