Crenarchaeota Euryarchaeota Nanoarchaeota
Other Archaea
Classification of phyla is from NCBI page
Search:
54 projects found  

3 accessions found for Halorubrum lacusprofundi ATCC 49239  

Data for CP001366  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001366.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001366_0130 CDS_148436-150085 53.4 9.8e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001366_0130 1/1 342 407 .. 1 87 [] 53.4 9.8e-16

Alignments of top-scoring domains:
CP001366_0130: domain 1 of 1, from 342 to 407: score 53.4, E = 9.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sH+LR+PL++ g elL+ee+ +++ e
CP001366_0 342 RLEQFASLVSHDLRNPLNVATGRFELLREEV------VMAADNEN-- 380

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++r++ r+++Lin++L+l+r +++
CP001366_0 381 -------------AEAVERALTRMDDLINQILTLAREGQP 407


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-15 1 0|=
-14 3 0|==
-13 7 0|====
-12 32 10|====*===========
-11 49 56|========================= *
-10 73 104|===================================== *
-9 76 107|====================================== *
-8 83 80|=======================================*==
-7 55 50|========================*===
-6 36 29|==============*===
-5 26 16|=======*=====
-4 17 8|===*=====
-3 5 4|=*=
-2 3 2|*=
-1 1 1|*
0 1 0|=
1 2 0|=
2 0 0|
> 3 3 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 77.4673
P(chi-square) = 1.579e-13

Total sequences searched: 473

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: