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3 accessions found for Halorubrum lacusprofundi ATCC 49239  

Data for CP001367  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001367.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001367_0369 CDS_418252-416816 54.2 4.7e-16 1
CP001367_0036 CDS_42401-44122 49.1 1.3e-14 1
CP001367_0322 CDS_359821-361542 49.1 1.3e-14 1
CP001367_0314 CDS_351104-349341 32.0 9.2e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001367_0369 1/1 274 335 .. 1 87 [] 54.2 4.7e-16
CP001367_0036 1/1 349 429 .. 1 87 [] 49.1 1.3e-14
CP001367_0322 1/1 349 429 .. 1 87 [] 49.1 1.3e-14
CP001367_0314 1/1 362 415 .. 1 74 [. 32.0 9.2e-10

Alignments of top-scoring domains:
CP001367_0369: domain 1 of 1, from 274 to 335: score 54.2, E = 4.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ +sH+LR+PL+ g a lL e e +
CP001367_0 274 RLDEFASVISHDLRNPLNIAHGRATLLAE-------------ETE-- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ +lr+++r++ +++d L+l+r +
CP001367_0 306 ----------NEHLDPLLRALDRMETIVEDTLTLARQGDT 335

CP001367_0036: domain 1 of 1, from 349 to 429: score 49.1, E = 1.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldk....v.lagdtels
++++f+ ++sH+LR+PL++ +g++e++ e ld ++++ ++ ++ +
CP001367_0 349 RLEQFTGMVSHDLRNPLNVAQGNSEIIYELLDAtktdDgYEPLSDET 395

eeqrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +t+ + ++r++rLi+dlL l+r ++
CP001367_0 396 LDTV-----------VTSAKTLSNTLDRMERLIDDLLVLARQGQA 429

CP001367_0322: domain 1 of 1, from 349 to 429: score 49.1, E = 1.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldk....v.lagdtels
++++f+ ++sH+LR+PL++ +g++e++ e ld ++++ ++ ++ +
CP001367_0 349 RLEQFTGMVSHDLRNPLNVAQGNSEIIYELLDAtktdDgYEPLSDET 395

eeqrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +t+ + ++r++rLi+dlL l+r ++
CP001367_0 396 LDTV-----------VTSAKTLSNTLDRMERLIDDLLVLARQGQA 429

CP001367_0314: domain 1 of 1, from 362 to 415: score 32.0, E = 9.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + ++H LR+ L++I g+aelL++ +el+++ r
CP001367_0 362 TLGVLNRVMRHNLRNALNVIDGHAELLED---------GELDPKSR- 398

peLRledpeyreyletilreaerllrL<-*
r + i+++a +++++
CP001367_0 399 ----------RASVMAIREQAASMQNI 415


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 4 0|==
-13 8 0|====
-12 26 8|===*=========
-11 49 44|=====================*===
-10 54 82|=========================== *
-9 75 85|====================================== *
-8 44 63|====================== *
-7 40 40|===================*
-6 26 23|===========*=
-5 16 12|=====*==
-4 7 6|==*=
-3 7 3|=*==
-2 5 1|*==
-1 4 0|==
0 0 0|
1 1 0|=
2 1 0|=
3 0 0|
4 0 0|
> 5 9 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 54.3176
P(chi-square) = 5.99e-09

Total sequences searched: 376

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: