Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

3 accessions found for Rhizobium sp. NGR234  

Data for CP001389  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001389.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001389_0776 CDS_845542-843215 101.1 2.4e-28 1
CP001389_1691 CDS_1788406-1789941 95.5 9.2e-27 1
CP001389_3366 CDS_3653050-3650297 94.4 1.9e-26 1
CP001389_0750 CDS_816916-818499 88.0 1.2e-24 1
CP001389_0028 CDS_24140-26407 81.9 6.3e-23 1
CP001389_0141 CDS_162355-163599 80.3 1.8e-22 1
CP001389_0329 CDS_384062-380709 72.2 3.6e-20 1
CP001389_3318 CDS_3589280-3587493 71.4 6.3e-20 1
CP001389_3313 CDS_3584127-3581644 68.6 3.7e-19 1
CP001389_1273 CDS_1335224-1336378 55.9 1.5e-15 1
CP001389_0119 CDS_130126-132810 50.8 4.2e-14 1
CP001389_1275 CDS_1338037-1340310 48.9 1.5e-13 1
CP001389_0181 CDS_210058-206552 48.5 1.8e-13 1
CP001389_0774 CDS_838734-840131 48.2 2.3e-13 1
CP001389_3341 CDS_3613114-3611801 43.2 6.1e-12 1
CP001389_3364 CDS_3649821-3648259 38.8 1.1e-10 1
CP001389_2969 CDS_3181521-3182768 37.6 2.2e-10 1
CP001389_1611 CDS_1699961-1697376 29.6 4.3e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001389_0776 1/1 549 618 .. 1 87 [] 101.1 2.4e-28
CP001389_1691 1/1 261 330 .. 1 87 [] 95.5 9.2e-27
CP001389_3366 1/1 421 489 .. 1 87 [] 94.4 1.9e-26
CP001389_0750 1/1 245 314 .. 1 87 [] 88.0 1.2e-24
CP001389_0028 1/1 241 306 .. 1 87 [] 81.9 6.3e-23
CP001389_0141 1/1 193 260 .. 1 87 [] 80.3 1.8e-22
CP001389_0329 1/1 885 954 .. 1 87 [] 72.2 3.6e-20
CP001389_3318 1/1 358 423 .. 1 87 [] 71.4 6.3e-20
CP001389_3313 1/1 598 666 .. 1 87 [] 68.6 3.7e-19
CP001389_1273 1/1 142 206 .. 1 87 [] 55.9 1.5e-15
CP001389_0119 1/1 665 733 .. 1 87 [] 50.8 4.2e-14
CP001389_1275 1/1 507 579 .. 1 87 [] 48.9 1.5e-13
CP001389_0181 1/1 800 865 .. 1 87 [] 48.5 1.8e-13
CP001389_0774 1/1 240 305 .. 1 87 [] 48.2 2.3e-13
CP001389_3341 1/1 217 283 .. 1 87 [] 43.2 6.1e-12
CP001389_3364 1/1 84 146 .. 7 87 .] 38.8 1.1e-10
CP001389_2969 1/1 209 270 .. 1 87 [] 37.6 2.2e-10
CP001389_1611 1/1 468 534 .. 1 87 [] 29.6 4.3e-08

Alignments of top-scoring domains:
CP001389_0776: domain 1 of 1, from 549 to 618: score 101.1, E = 2.4e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g++e+L+++++ ++l++e+
CP001389_0 549 AKSEFLANMSHELRTPLNAILGFSEILQNQMF------GPLGSEK-- 587

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i++++++ll+ ind+Ld+s+ieag
CP001389_0 588 ---------YDEYSRDIHESGKHLLNVINDILDMSKIEAG 618

CP001389_1691: domain 1 of 1, from 261 to 330: score 95.5, E = 9.2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++e++ +e+ ++l+ ++
CP001389_1 261 AKSRFLASMSHELRTPLNAILGFSEVMSTEV------LGPLNNPT-- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey+ i+r++e+ll+Lin++Ldlsrieag
CP001389_1 300 ---------YKEYTVDIHRSGEHLLNLINEILDLSRIEAG 330

CP001389_3366: domain 1 of 1, from 421 to 489: score 94.4, E = 1.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+gy+e+L ee+ ++ +e ++
CP001389_3 421 AKSRFLASMSHELRTPLNAIIGYSEMLIEEA-------HDHGENEL- 459

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i +++++ll+Lind+Ldls+iea+
CP001389_3 460 ----------VPDLEKIASAGRHLLALINDILDLSKIEAN 489

CP001389_0750: domain 1 of 1, from 245 to 314: score 88.0, E = 1.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++sHELRTPL+aI+g++++L e++ ++l + +
CP001389_0 245 AKTRFLAAVSHELRTPLNAILGFSDVLTGEYF------GKLENDRQ- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey++ i+r++ +ll+ +n +Ld s+ieag
CP001389_0 285 ----------REYVSLIHRSGTHLLSVVNTMLDVSKIEAG 314

CP001389_0028: domain 1 of 1, from 241 to 306: score 81.9, E = 6.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks++la++ HE+RTPL++I+g+++lL t ls+eq
CP001389_0 241 AKSRLLATVTHEIRTPLSGILGMSHLLAQ---------TQLSAEQ-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl ++++++ l +L++dl d+s + ag
CP001389_0 277 ----------RNYLADMQQSGHALVQLVEDLIDFSSLSAG 306

CP001389_0141: domain 1 of 1, from 193 to 260: score 80.3, E = 1.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+an+sHELRTPL+++rg++e+L +++++ +++
CP001389_0 193 MRSDFVANASHELRTPLASLRGFIETLAG---------PARNDLKAQ 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++++++ r++rL++dlL lsr+e
CP001389_0 231 ----------EKFFGIMHEQVTRMSRLVDDLLSLSRLELK 260

CP001389_0329: domain 1 of 1, from 885 to 954: score 72.2, E = 3.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla +sHE+RTPL+aI+g+++++ + ++ + +
CP001389_0 885 HKTEFLARVSHEIRTPLNAIIGFSDMMAS------EHFGPIGNPR-- 923

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey i r++++ l+++ndlLd+s+ieag
CP001389_0 924 ---------YIEYAGDIGRSGRHVLDIVNDLLDISKIEAG 954

CP001389_3318: domain 1 of 1, from 358 to 423: score 71.4, E = 6.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L +++++ +
CP001389_3 358 AIEAFAADVSHELKNPLTSLRSAVETLPL----------ARTDDSK- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i+++++rl+rLi+d+ d sr++a+
CP001389_3 394 ----------KRLLDIIQHDVRRLDRLISDISDASRLDAE 423

CP001389_3313: domain 1 of 1, from 598 to 666: score 68.6, E = 3.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ ++s ELR PLt I+g+a+lL++ + ++l++ q
CP001389_3 598 LKNDFVHHVSYELRSPLTNIIGFADLLKT------PAFGALNDRQ-- 636

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++ i ++ ll ++nd+Ldl+ +ag
CP001389_3 637 ----------AEYVDHIATSSALLLTIVNDILDLATVDAG 666

CP001389_1273: domain 1 of 1, from 142 to 206: score 55.9, E = 1.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++l+HE+++PL++Irg+a+lL++ +++e+
CP001389_1 142 SVTGLASMLAHEIKNPLSGIRGAAQLLET----------SANDED-- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i +e++r+ +L++++ +s +
CP001389_1 177 ----------RALTRLICDETDRIVSLVDRMEVFSDERPV 206

CP001389_0119: domain 1 of 1, from 665 to 733: score 50.8, E = 4.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l++lsH+L TPL++I ++ L+ +e ++++++
CP001389_0 665 FRAALLSSLSHDLTTPLATIGSAVISLRQ--------LGEGTPKDAR 703

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i++e+ rl r + +lLd+ rieag
CP001389_0 704 ----------EDLLKSIEEESGRLTRFVTNLLDMNRIEAG 733

CP001389_1275: domain 1 of 1, from 507 to 579: score 48.9, E = 1.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae L++++ ++ ++ ++ +
CP001389_1 507 AWADVARRIAHEIKNPLTPIQLSAERLKRRY----GKQIDQQDKAV- 548

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ti r++e + r+++++ ++r+ +
CP001389_1 549 ---------FDQCTDTIVRQVEDIGRMVDEFSAFARMPKP 579

CP001389_0181: domain 1 of 1, from 800 to 865: score 48.5, E = 1.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H++ +PL+a r+y++ L e l++ ++
CP001389_0 800 GKTRFFAAAGHDILQPLNAARLYSSSLVE----------RLGDSDN- 835

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ i++++e+ ++++ +Ld+sr+++g
CP001389_0 836 ----------KALVQNIDSSLESVEAILGAVLDISRLDTG 865

CP001389_0774: domain 1 of 1, from 240 to 305: score 48.2, E = 2.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + n++H+L+TPLt +r ae++l+ ++ + q
CP001389_0 240 GLKQVSDNIAHDLKTPLTRLRNKAEAALA---------SKEGGNQ-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le i+ e+++l r n lL +sr eag
CP001389_0 276 ----------NGALEEIIGESDQLIRTFNALLMISRVEAG 305

CP001389_3341: domain 1 of 1, from 217 to 283: score 43.2, E = 6.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HEL TPL++I a+ +++ el+++ r
CP001389_3 217 QLDGLAAAAAHELGTPLATITVVAKEMER----------ELGDDPR- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e ++ +++++er+++++ +l +ls ++
CP001389_3 253 ---------FGEDVHLLRSQSERCRDILKRLTTLSSESEE 283

CP001389_3364: domain 1 of 1, from 84 to 146: score 38.8, E = 1.1e-10
*->anlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRle
a l+H+LRTPL+aI+gy+e++lee+ +el + ++
CP001389_3 84 ARLRHDLRTPLNAIIGYSEMILEEA-------AELQPHTL------- 116

dpeyreyletilreaerllrLindlLdlsrieag<-*
+e l +il +a ll++++ + ls a
CP001389_3 117 ----KEDLGVILAAAAELLKQVEAIAGLSHGSAI 146

CP001389_2969: domain 1 of 1, from 209 to 270: score 37.6, E = 2.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +lan+sHELR PL+ +r +++l + ++e+r
CP001389_2 209 SHRALLANASHELRSPLARLRIAIDLFEQ-----------VPDEKR- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e i r + l+ L++++L sr+++
CP001389_2 244 -------------KEEIVRNLAELDTLVEEILLASRLDHV 270

CP001389_1611: domain 1 of 1, from 468 to 534: score 29.6, E = 4.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ LtaI++ a+ Ll ++++++ +
CP001389_1 468 AVGTLAGGIAHDFNNVLTAILLSADHLLL---------SARPADAT- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i+r a+r L+++lL +sr ++
CP001389_1 505 ----------FADLMEIKRNANRAAVLVRQLLAFSRKQTM 534


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 1 0|=
-14 9 0|=
-13 34 2|*==
-12 131 83|======*====
-11 343 430|=========================== *
-10 571 798|============================================ *
-9 740 825|========================================================= *
-8 623 617|===============================================*
-7 496 389|=============================*=========
-6 303 224|=================*======
-5 154 122|=========*==
-4 98 65|====*===
-3 58 34|==*==
-2 20 18|=*
-1 13 9|*
0 7 4|*
1 5 2|*
2 2 1|*
3 2 0|=
> 4 23 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 217.1273
P(chi-square) = 3.877e-310

Total sequences searched: 3633

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: