Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Wolbachia sp. wRi  

Data for CP001391  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001391.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001391_1115 CDS_1399182-1400609 80.1 6.7e-23 1
CP001391_1009 CDS_1284135-1286618 41.4 6.2e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001391_1115 1/1 239 308 .. 1 87 [] 80.1 6.7e-23
CP001391_1009 1/1 439 505 .. 1 87 [] 41.4 6.2e-12

Alignments of top-scoring domains:
CP001391_1115: domain 1 of 1, from 239 to 308: score 80.1, E = 6.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +f+a++ HELRTPL+aI+g+ael+++e + +++ q
CP001391_1 239 NKLKFFASVTHELRTPLNAIIGFAELIKNET------LGSMDDSQ-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + i++++ +ll+Lind+Ld+s++e+
CP001391_1 278 ---------YKEYADDIYNAGTHLLALINDVLDFSKAESS 308

CP001391_1009: domain 1 of 1, from 439 to 505: score 41.4, E = 6.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g+++lLl + ++++
CP001391_1 439 AIGQLAGGIAHDFNNILTGIIGFCDLLLL--------QHSAGDPS-- 475

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ a+r ++L+++lL +sr ++
CP001391_1 476 ----------FGDIIQIQQNAKRGSNLVRQLLAFSRRQTL 505


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 4 0|=
-13 15 0|====
-12 65 26|======*==========
-11 123 136|=============================== *
-10 208 252|==================================================== *
-9 229 261|==========================================================*
-8 199 195|================================================*=
-7 96 123|======================== *
-6 73 70|=================*=
-5 55 38|=========*====
-4 36 20|====*====
-3 10 10|==*
-2 19 5|=*===
-1 5 3|*=
0 5 1|*=
1 2 0|=
> 2 6 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 124.5590
P(chi-square) = 5.996e-22

Total sequences searched: 1150

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: