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Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

1 accessions found for Acidovorax ebreus TPSY  

Data for CP001392  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001392.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001392_0950 CDS_993876-998711 90.7 2e-25 1
CP001392_1464 CDS_1565660-1567057 88.8 7e-25 1
CP001392_0617 CDS_645153-648566 81.8 6.5e-23 1
CP001392_2884 CDS_3123586-3125286 70.7 9.3e-20 1
CP001392_3286 CDS_3575413-3573968 66.9 1.1e-18 1
CP001392_1099 CDS_1164357-1165445 65.6 2.6e-18 1
CP001392_2153 CDS_2341292-2342695 58.4 2.7e-16 1
CP001392_3181 CDS_3456694-3454406 56.4 1e-15 1
CP001392_2040 CDS_2226112-2227515 56.0 1.3e-15 1
CP001392_0620 CDS_650036-651184 54.8 2.9e-15 1
CP001392_1437 CDS_1537926-1536517 52.6 1.3e-14 1
CP001392_0208 CDS_234472-233246 52.1 1.7e-14 1
CP001392_0028 CDS_31185-33839 51.8 2.1e-14 1
CP001392_1387 CDS_1480567-1479107 51.8 2.1e-14 1
CP001392_2166 CDS_2358627-2360000 51.1 3.2e-14 1
CP001392_1705 CDS_1844804-1842642 49.0 1.3e-13 1
CP001392_0967 CDS_1017671-1016184 45.3 1.4e-12 1
CP001392_1721 CDS_1865316-1863961 44.5 2.4e-12 1
CP001392_3448 CDS_3762826-3761753 44.3 2.7e-12 1
CP001392_1625 CDS_1748548-1746002 39.0 9e-11 1
CP001392_2448 CDS_2661522-2663027 38.9 9.3e-11 1
CP001392_0607 CDS_635626-636396 32.3 7e-09 1
CP001392_3304 CDS_3599940-3597790 28.1 1.1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001392_0950 1/1 880 945 .. 1 87 [] 90.7 2e-25
CP001392_1464 1/1 205 271 .. 1 87 [] 88.8 7e-25
CP001392_0617 1/1 459 527 .. 1 87 [] 81.8 6.5e-23
CP001392_2884 1/1 327 392 .. 1 87 [] 70.7 9.3e-20
CP001392_3286 1/1 244 310 .. 1 87 [] 66.9 1.1e-18
CP001392_1099 1/1 138 203 .. 1 87 [] 65.6 2.6e-18
CP001392_2153 1/1 243 309 .. 1 87 [] 58.4 2.7e-16
CP001392_3181 1/1 526 598 .. 1 87 [] 56.4 1e-15
CP001392_2040 1/1 248 311 .. 1 87 [] 56.0 1.3e-15
CP001392_0620 1/1 160 225 .. 1 87 [] 54.8 2.9e-15
CP001392_1437 1/1 236 301 .. 1 87 [] 52.6 1.3e-14
CP001392_0208 1/1 189 251 .. 1 87 [] 52.1 1.7e-14
CP001392_0028 1/1 518 583 .. 1 87 [] 51.8 2.1e-14
CP001392_1387 1/1 235 307 .. 1 87 [] 51.8 2.1e-14
CP001392_2166 1/1 225 291 .. 1 87 [] 51.1 3.2e-14
CP001392_1705 1/1 340 406 .. 1 87 [] 49.0 1.3e-13
CP001392_0967 1/1 257 321 .. 1 87 [] 45.3 1.4e-12
CP001392_1721 1/1 237 299 .. 1 87 [] 44.5 2.4e-12
CP001392_3448 1/1 130 200 .. 1 87 [] 44.3 2.7e-12
CP001392_1625 1/1 598 668 .. 1 87 [] 39.0 9e-11
CP001392_2448 1/1 255 314 .. 1 87 [] 38.9 9.3e-11
CP001392_0607 1/1 32 102 .. 1 87 [] 32.3 7e-09
CP001392_3304 1/1 478 555 .. 1 87 [] 28.1 1.1e-07

Alignments of top-scoring domains:
CP001392_0950: domain 1 of 1, from 880 to 945: score 90.7, E = 2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHE+RTPL+aI+g+++l+l+ + l++ q
CP001392_0 880 LKSRFLANMSHEIRTPLNAIIGMSHLALK---------SGLDARQ-- 915

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ ++++++++ll ind+Ld+s+ieag
CP001392_0 916 ----------SGYVVRMQQAGQHLLGVINDILDFSKIEAG 945

CP001392_1464: domain 1 of 1, from 205 to 271: score 88.8, E = 7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHE+RTPLt+++g++e+L++ ls e+r
CP001392_1 205 MRRDFVANVSHEIRTPLTVLMGFVETLQT---------LQLSNEER- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ + ++a r+++L++dlL+lsr+e
CP001392_1 242 ----------ARYLRMMSQQAVRMQNLVQDLLTLSRLEGS 271

CP001392_0617: domain 1 of 1, from 459 to 527: score 81.8, E = 6.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ + +a+lL + + ++l++eq
CP001392_0 459 YKSEFLANMSHELRTPLNSSLILAKLLAD------NKQQNLTAEQ-- 497

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y +ti++++ ll+Lind+Ldls+ieag
CP001392_0 498 ----------VRYAQTIHNAGTDLLNLINDILDLSKIEAG 527

CP001392_2884: domain 1 of 1, from 327 to 392: score 70.7, E = 9.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+++HE+R+PL+aI + elL e +l+++++
CP001392_2 327 AMGRMSAAVAHEIRNPLAAIVQANELLDE----------DLDDPTQ- 362

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ +++ a+rl r+ +d+Ld++r +++
CP001392_2 363 ----------KRLTHMVRQNADRLVRITEDVLDIARVQHQ 392

CP001392_3286: domain 1 of 1, from 244 to 310: score 66.9, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fla+++H+L+TPL+++r+ a+l+++ +++ +ee
CP001392_3 244 TQKRFLADAAHQLKTPLAGLRMQADLAQR--------EGTSTEEL-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ i r++ r + +n+lL l+r+e g
CP001392_3 281 ----------KQSLKQIGRSSIRATHTVNQLLALARAEGG 310

CP001392_1099: domain 1 of 1, from 138 to 203: score 65.6, E = 2.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e+++nl+HE+++PL +Irg+a+lL++ el + ++
CP001392_1 138 ANKELIRNLAHEIKNPLGGIRGAAQLLEM----------ELESRDL- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i++ea+rl++L+++lL r +
CP001392_1 174 ----------TEYTQVIIHEADRLQSLVDRLLAPHRHPHL 203

CP001392_2153: domain 1 of 1, from 243 to 309: score 58.4, E = 2.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f ++l+HELRTP++ +++ ++++l+ +++++ +
CP001392_2 243 RLTDFSSDLAHELRTPISNLLTQTQVALA---------SKRDAAT-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr++l + +e +rl r++ d+L l++ e g
CP001392_2 279 ---------YRDILASNAEEFQRLARMVADMLFLAKTERG 309

CP001392_3181: domain 1 of 1, from 526 to 598: score 56.4, E = 1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+ +l +++l++ +++
CP001392_3 526 AWGEVARRLAHEIKNPLTPIQLSAERLEIKL------SGKLPAAEQA 566

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti ++++ + rL+n+++d++r+ +
CP001392_3 567 VL--------TKSVKTIVDQVDAMKRLVNEFRDYARLPSA 598

CP001392_2040: domain 1 of 1, from 248 to 311: score 56.0, E = 1.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sH+LRTPL+++++ ++ +l+ ++l++ q+
CP001392_2 248 HQQRFVRDASHQLRTPLAVLKTQVQSALR---------GDLPPTQA- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ i + ++r +L n++L l++ e+
CP001392_2 285 -------------LREIGDTVDRATQLANQMLALAKVEQL 311

CP001392_0620: domain 1 of 1, from 160 to 225: score 54.8, E = 2.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a lsH+LR PL+aI++ a++L++ ++ +++
CP001392_0 160 INEMLMAVLSHDLRSPLSAIMAVASALQR---------APEPAKV-- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++++++r+ r+i+dlLd +r+++
CP001392_0 196 ----------QALACNVQQAGRRMGRMIEDLLDVTRARQH 225

CP001392_1437: domain 1 of 1, from 236 to 301: score 52.6, E = 1.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++an++HELRTPL+++r+ ++++l+++ ++ ++ qr
CP001392_1 236 TERALAANAAHELRTPLATVRLRLQTALAQV-------ADGPARQR- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+++++l r + lL+lsr+e+g
CP001392_1 275 -------------VAEALDALDQLGRRSEKLLQLSRAESG 301

CP001392_0208: domain 1 of 1, from 189 to 251: score 52.1, E = 1.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +lan+sHELR PLt Ir+ +el++ ++ s+
CP001392_0 189 SHKSLLANASHELRSPLTRIRMGLELMQG---------GTPSPAF-- 224

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
i+r + l++L++++L sr+++g
CP001392_0 225 -------------RAEIERNIAELDQLVDEILLASRLDSG 251

CP001392_0028: domain 1 of 1, from 518 to 583: score 51.8, E = 2.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H+L +PL+a r++a+lL+ + ++
CP001392_0 518 YKTRFVAAAVHDLLQPLNAARMFASLLRG---------HLHDAAG-- 553

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++i+ ++ + ++n lLd+sr+e+g
CP001392_0 554 ----------RQVADSIDGALAAQDGILNSLLDISRMESG 583

CP001392_1387: domain 1 of 1, from 235 to 307: score 51.8, E = 2.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
++++a+++HELRTPLtaI++++++++ + +ag ++s++++
CP001392_1 235 HERRWTADAAHELRTPLTAIKTHVQVAQL----TlAAGNNNASPDKA 277

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ + + ++++ + +++lL+l+r e+
CP001392_1 278 -----------ANALRQAGEGIDHMHATLEQLLQLARVESA 307

CP001392_2166: domain 1 of 1, from 225 to 291: score 51.1, E = 3.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HEL TPL+++ +el+l+ +s+e++
CP001392_2 225 QMEGFNADVAHELCTPLATMVSGTELALR---------KVRSAEEL- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l + l+e++r+ ++++ +L ls+++ g
CP001392_2 262 ----------QDVLGSNLEELHRITDIVQGMLFLSQADRG 291

CP001392_1705: domain 1 of 1, from 340 to 406: score 49.0, E = 1.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ L+aI+g++el+++ + + +
CP001392_1 340 AVGTMAGGIAHDFNNILHAILGNVELAKA---------DCPPGTPM- 376

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l i+++++r ++L++++L++sr e +
CP001392_1 377 ----------YESLLEIDKAGRRARDLVRQILTFSRNEPP 406

CP001392_0967: domain 1 of 1, from 257 to 321: score 45.3, E = 1.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ + +HELRTPL+a+r+ +e+ ++++ + +e++
CP001392_0 257 SRRQWIGDTAHELRTPLAAMRAEIEAVQDGV-------RPFDEKT-- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++r++ rl +L+ dl+ +
CP001392_0 295 -------------ARRLHRQVMRLIQLVGDLRASVDMAGD 321

CP001392_1721: domain 1 of 1, from 237 to 299: score 44.5, E = 2.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++an++HELRTPLta r+ ++++le +
CP001392_1 237 VERALAANAAHELRTPLTAARLRLQTALE-------------HGLH- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++ ++ +++ l+r + lL+lsr+e+
CP001392_1 270 ----------RDDVQAAIAALQTLSRRTEKLLQLSRAESS 299

CP001392_3448: domain 1 of 1, from 130 to 200: score 44.3, E = 2.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++ +++HE ++PL+aI + +++++l +++++ ++
CP001392_3 130 SMEALTTSIAHEVNQPLAAIVTSGNACQRWL----GQEPPNLDKA-- 170

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++il++a r +++i +++ l+r e +
CP001392_3 171 ----------RQALDRILSDAGRASNIIARVRSLTRGEPP 200

CP001392_1625: domain 1 of 1, from 598 to 668: score 39.0, E = 9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++++HEL++PLtaI+ y++ + + + + see +
CP001392_1 598 TMGEMASSVAHELNQPLTAISNYCSGMVSRI-----QGGQISEEAL- 638

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++ ++a+r ++i++++ + + ++
CP001392_1 639 ----------LTALQKTAHQAQRAGQIIQRIRAFVKKSEP 668

CP001392_2448: domain 1 of 1, from 255 to 314: score 38.9, E = 9.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ +r+ +e+ ++
CP001392_2 255 DRAVMLAGISHDLRTPLARLRLETEMSVTD----------------- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e + ++ +l++ i+ +Ld++r ++
CP001392_2 285 ----------DVAREHMVADIVQLDATIDKFLDYARPDTT 314

CP001392_0607: domain 1 of 1, from 32 to 102: score 32.3, E = 7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++fl+++sH+LR PL + y l +e +++++ +++
CP001392_0 32 AQEDFLRGVSHDLRAPLRHVTSYGALVRE-----VLQEQPPQVDEA- 72

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l t++++a+r+ ++i+ l ++r+++
CP001392_0 73 ----------LGFLATMEQSARRMAQMIDGLQAIARARSA 102

CP001392_3304: domain 1 of 1, from 478 to 555: score 28.1, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldk...v.lagdtelse
+e+++ lsHEL++PL+aI+ ya l+ l+ ++ +l++ ++l +
CP001392_3 478 TVGEMASLLSHELNQPLAAISSYANGSLNLLEPapgAeLPSPQDLQD 524

eqrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i +aer r i + d+ r + +
CP001392_3 525 VRVG-------------VQRIAAQAERAGRVIKSVHDFVRRRDQ 555


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 8 0|=
-13 31 2|*==
-12 122 79|======*====
-11 297 412|========================= *
-10 578 765|================================================= *
-9 659 790|======================================================= *
-8 607 591|=================================================*=
-7 457 372|==============================*========
-6 322 214|=================*=========
-5 164 117|=========*====
-4 94 62|=====*==
-3 48 33|==*=
-2 31 17|=*=
-1 13 9|*=
0 7 4|*
1 10 2|*
2 2 1|*
3 2 0|=
4 1 0|=
5 0 0|
> 6 26 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 247.8960
P(chi-square) = 0

Total sequences searched: 3479

Whole sequence top hits:
tophits_s report:
Total hits: 23
Satisfying E cutoff: 23
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 23
Satisfying E cutoff: 23
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: