Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Neorickettsia risticii str. Illinois  

Data for CP001431  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001431.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001431_0003 CDS_3585-2242 87.1 5.2e-25 1
CP001431_0339 CDS_309136-311373 48.2 5.7e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001431_0003 1/1 221 287 .. 1 87 [] 87.1 5.2e-25
CP001431_0339 1/1 364 430 .. 1 87 [] 48.2 5.7e-14

Alignments of top-scoring domains:
CP001431_0003: domain 1 of 1, from 221 to 287: score 87.1, E = 5.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+flan+sHEL+TPL+aI+g+++l+++ + l+ e+
CP001431_0 221 QKSQFLANVSHELKTPLNAIIGFSDLIRT--------AEVLGTEH-- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey + i+ ++++ll+Lind+Ld+s+ e +
CP001431_0 258 ----------REYANDIYYSGNHLLNLINDILDFSKSELN 287

CP001431_0339: domain 1 of 1, from 364 to 430: score 48.2, E = 5.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+ +++H++++ LtaI+g+ae+Lle++ l +++
CP001431_0 364 SLGELSGGIAHDFNNILTAIMGFAEILLEDV--------RLESKH-- 400

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i+ +a+ ++L+ +L +sr ++
CP001431_0 401 ----------YYNIAQIRYSAKKGRDLVKKILAFSRKQTL 430


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-15 3 0|=
-14 18 0|======
-13 46 0|================
-12 66 20|======*===============
-11 100 106|================================== *
-10 158 197|===================================================== *
-9 155 203|==================================================== *
-8 122 152|========================================= *
-7 92 96|===============================*
-6 52 55|==================*
-5 52 30|=========*========
-4 10 16|==== *
-3 8 8|==*
-2 5 4|=*
-1 3 2|*
0 3 1|*
1 1 0|=
> 2 4 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 145.1706
P(chi-square) = 8.812e-27

Total sequences searched: 898

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: