Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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3 projects found  

1 accessions found for Acidobacterium capsulatum ATCC 51196  

Data for CP001472  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001472.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001472_0890 CDS_1098865-1097432 91.4 1.2e-25 1
CP001472_2675 CDS_3275616-3278015 76.8 1.7e-21 1
CP001472_1706 CDS_2118371-2120458 57.5 4.9e-16 1
CP001472_0646 CDS_767719-769662 56.6 8.8e-16 2
CP001472_1201 CDS_1483869-1485299 55.5 1.8e-15 1
CP001472_0173 CDS_230755-228056 53.4 7.1e-15 1
CP001472_0477 CDS_554656-556644 52.5 1.3e-14 1
CP001472_1563 CDS_1956027-1957112 46.6 6.1e-13 1
CP001472_2558 CDS_3114522-3113116 45.9 9.4e-13 1
CP001472_0181 CDS_241655-240141 39.9 4.7e-11 1
CP001472_0479 CDS_557056-558615 39.7 5.6e-11 1
CP001472_0849 CDS_1040627-1038375 36.4 4.7e-10 1
CP001472_1418 CDS_1757176-1755290 32.0 8e-09 1
CP001472_2621 CDS_3210365-3212377 29.4 4.4e-08 1
CP001472_1616 CDS_2014133-2016475 27.9 1.2e-07 1
CP001472_0431 CDS_496990-499800 27.8 1.3e-07 1
CP001472_2096 CDS_2560631-2559138 27.5 1.6e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001472_0890 1/1 253 320 .. 1 87 [] 91.4 1.2e-25
CP001472_2675 1/1 565 633 .. 1 87 [] 76.8 1.7e-21
CP001472_1706 1/1 443 507 .. 1 87 [] 57.5 4.9e-16
CP001472_1201 1/1 239 305 .. 1 87 [] 55.5 1.8e-15
CP001472_0646 1/2 412 478 .. 1 87 [] 54.8 2.8e-15
CP001472_0173 1/1 674 740 .. 1 87 [] 53.4 7.1e-15
CP001472_0477 1/1 442 510 .. 1 87 [] 52.5 1.3e-14
CP001472_1563 1/1 99 165 .. 1 87 [] 46.6 6.1e-13
CP001472_2558 1/1 242 308 .. 1 87 [] 45.9 9.4e-13
CP001472_0181 1/1 267 333 .. 1 87 [] 39.9 4.7e-11
CP001472_0479 1/1 280 345 .. 1 87 [] 39.7 5.6e-11
CP001472_0849 1/1 524 592 .. 1 87 [] 36.4 4.7e-10
CP001472_1418 1/1 390 455 .. 1 87 [] 32.0 8e-09
CP001472_2621 1/1 443 508 .. 1 87 [] 29.4 4.4e-08
CP001472_1616 1/1 531 602 .. 1 87 [] 27.9 1.2e-07
CP001472_0431 1/1 706 755 .. 1 69 [. 27.8 1.3e-07
CP001472_2096 1/1 255 329 .. 1 87 [] 27.5 1.6e-07

Alignments of top-scoring domains:
CP001472_0890: domain 1 of 1, from 253 to 320: score 91.4, E = 1.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt+I+gy+e+Ll+ t+ ++++
CP001472_0 253 MRRDFVANVSHELRTPLTSISGYVETLLD--------TTPDLPPHV- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l +il+ a+r++rL +dlL l+ e+g
CP001472_0 291 ----------QEFLGIILKNANRMNRLTEDLLALANVESG 320

CP001472_2675: domain 1 of 1, from 565 to 633: score 76.8, E = 1.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ef++++sHELRTPLt++r+++ l+ + + ++e+
CP001472_2 565 MKDEFISTVSHELRTPLTSLRAALGLIAG------GALQRRPEKV-- 603

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++++ +rl rL+nd+Ld++r+++g
CP001472_2 604 ----------QQMFDVAIGNCDRLVRLVNDILDFERLGSG 633

CP001472_1706: domain 1 of 1, from 443 to 507: score 57.5, E = 4.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++HEL++PLt+++gy+e++ e e +
CP001472_1 443 SLGQLAAGVAHELNNPLTVLMGYSEIMTE----------EPEPRV-- 477

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y +l ea+r+ ++i+ l + r a+
CP001472_1 478 ----------QKYAGMMLTEARRMKQIIESLVRFWRPSAE 507

CP001472_1201: domain 1 of 1, from 239 to 305: score 55.5, E = 1.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f a++sH+LRT +t+++g+a+l l+ + +s++++
CP001472_1 239 RLSRFSADVSHDLRTSITVMLGTAQLSLR---------QQRSAQEH- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ le+i e + + L++ lL l+r ++
CP001472_1 276 ----------RDDLERIVTECRTASTLLDALLSLARSDNF 305

CP001472_0646: domain 1 of 2, from 412 to 478: score 54.8, E = 2.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a++ HE ++P++aI ++elL++++ el e+
CP001472_0 412 SIGRLTAGVGHEVKNPINAIVVHLELLRNKV--------ELKEPA-- 448

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i++e++rl+r ++ l d+sr
CP001472_0 449 ----------QKHLDIIQSEIRRLDRVVQTLVDFSRPVDL 478

CP001472_0173: domain 1 of 1, from 674 to 740: score 53.4, E = 7.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++HE +TPL++I+ y+++L + + ++++ +
CP001472_0 674 SIGLLAAGVAHEVNTPLAVISSYTQMLSK---------QVRGDDRL- 710

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++i +++ r ++++n lL +sr ++
CP001472_0 711 ----------SPLLDKITQQTFRASEIVNGLLNFSRTGTS 740

CP001472_0477: domain 1 of 1, from 442 to 510: score 52.5, E = 1.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL ++ g++ +L e++ + l+++
CP001472_0 442 ELEAFSYSVSHDLRAPLRSVDGFSLALVEDYG------SSLDADG-- 480

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+++i++ ++r+ +Li+ lL+lsri
CP001472_0 481 ----------RDYVQRIRKGVQRMGQLIDSLLQLSRITRA 510

CP001472_1563: domain 1 of 1, from 99 to 165: score 46.6, E = 6.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ a+++HE+++PL++I ++ lL+ ++ ls+
CP001472_1 99 ELGRLSASIAHEINNPLSSITNLLFLLRQ--------EPGLSPLA-- 135

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl+ i++e +r ++ + L +sr +
CP001472_1 136 ----------TGYLDLIESEMDRVISISKQTLSFSRESST 165

CP001472_2558: domain 1 of 1, from 242 to 308: score 45.9, E = 9.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl n++HEL+T +t ++ ++lL ++s+e+
CP001472_2 242 QQQIFLHNAAHELKTAVTIVKSSLQLLAS---------RPRSSED-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ l+ l + r+++L++ +L l+r+e++
CP001472_2 278 ---------YHAGLNLCLADCGRMEELVQSMLLLARLEQP 308

CP001472_0181: domain 1 of 1, from 267 to 333: score 39.9, E = 4.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a+++HE+++PL+a++ ++ l+ + d++l++ +
CP001472_0 267 TAGRFAASMAHEINNPLAAVINLVYLASR--------DEKLDAST-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l+ ++re+ r +r + + L + + +
CP001472_0 304 ----------RTLLSEADRELTRVSRVVTQTLRFHKQSTF 333

CP001472_0479: domain 1 of 1, from 280 to 345: score 39.7, E = 5.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HE+++PL a+ + lL++ t l +
CP001472_0 280 AAGRLAASIAHEINNPLEAVTNCLYLLQR---------TRLEDHA-- 315

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+ +++e+er ++ + L + r +
CP001472_0 316 ----------REYITLAQNELERVVHITTQTLRFYRQSTR 345

CP001472_0849: domain 1 of 1, from 524 to 592: score 36.4, E = 4.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR P I+g+aelLl ++++l+e+
CP001472_0 524 ELEAFSYSVSHDLRAPFRHISGFAELLLI------DESDKLTEKG-- 562

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+e+i ++a+ L++ lL +s+i
CP001472_0 563 ----------KRYIEKITQSAQFAGVLVDSLLNFSQIART 592

CP001472_1418: domain 1 of 1, from 390 to 455: score 32.0, E = 8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HE+++PL a+ ++ lL ++l+e+
CP001472_1 390 AAGRLAASIAHEINNPLEAVTNLLYLLHQ---------ADLDEDS-- 425

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ +++e+ r ++ ++ L + r +
CP001472_1 426 ----------ARYVAMAQHEVARVSEVAQQTLRFYRQSTL 455

CP001472_2621: domain 1 of 1, from 443 to 508: score 29.4, E = 4.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HE+++PL a++ ++ lL+ ++e
CP001472_2 443 ATGRMAATIAHEINNPLEAVMNLLYLLRP---------KVTDAEG-- 478

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl +++e++r +++ + L + r a
CP001472_2 479 ----------RAYLANAESELNRVSHIAKQTLGYYREVAS 508

CP001472_1616: domain 1 of 1, from 531 to 602: score 27.9, E = 1.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e + ++HE+++PLt + + ae +++ + + +e q+
CP001472_1 531 AWKEVAQRVAHEIKNPLTPVTLSAERIRR------HNARNTPESQQV 571

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++il++ae+ +rL++++ l+ a
CP001472_1 572 ---------IERCCDIILSAAESVRRLVDQFGVLAEFPAA 602

CP001472_0431: domain 1 of 1, from 706 to 755: score 27.8, E = 1.3e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HE ++PL++I+++a+++l+ l ++ +++
CP001472_0 706 SLGMLTASIAHEVNQPLSGIITNASTCLRML-------STDPPDV-- 743

peLRledpeyreyletilreae<-*
+ ++et++r ++
CP001472_0 744 ----------QGAIETARRTIR 755

CP001472_2096: domain 1 of 1, from 255 to 329: score 27.5, E = 1.6e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
+++ ++a+++HEL TPL +I a L++++ ++la+++ l+ e
CP001472_2 255 SLGTLAAGAAHELGTPLGTIAIVARELERYA--TtLAEREGLNHEA- 298

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L e + i++e+er++r+++ + s +a+
CP001472_2 299 CDDL-------SEDARLIRSEVERCQRILQGM---SARGAE 329


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 17 0|==
-13 53 2|*====
-12 164 77|======*========
-11 291 400|=========================== *
-10 530 743|================================================= *
-9 625 768|========================================================= *
-8 585 575|====================================================*=
-7 460 362|================================*=========
-6 273 208|==================*======
-5 165 114|==========*====
-4 87 61|=====*==
-3 40 32|==*=
-2 26 16|=*=
-1 13 8|*=
0 11 4|*
1 5 2|*
2 5 1|*
3 2 0|=
4 1 0|=
5 2 0|=
6 0 0|
7 1 0|=
8 0 0|
9 1 0|=
> 10 25 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 303.5596
P(chi-square) = 0

Total sequences searched: 3382

Whole sequence top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: