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Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Vibrio cholerae MJ-1236  

Data for CP001486  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001486.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001486_0602 CDS_690061-693015 94.5 4.7e-27 1
CP001486_0576 CDS_662790-665363 91.9 2.5e-26 1
CP001486_0237 CDS_284388-285731 61.6 1e-17 1
CP001486_0787 CDS_898160-896667 55.8 4.4e-16 1
CP001486_0017 CDS_14809-13199 52.9 2.9e-15 1
CP001486_0606 CDS_697661-700030 44.3 8e-13 2
CP001486_1002 CDS_1081938-1083392 28.2 2.9e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001486_0602 1/1 469 534 .. 1 87 [] 94.5 4.7e-27
CP001486_0576 1/1 479 544 .. 1 87 [] 91.9 2.5e-26
CP001486_0237 1/1 230 295 .. 1 87 [] 61.6 1e-17
CP001486_0787 1/1 269 337 .. 1 87 [] 55.8 4.4e-16
CP001486_0017 1/1 299 366 .. 1 87 [] 52.9 2.9e-15
CP001486_0606 2/2 563 631 .. 1 87 [] 41.9 3.9e-12
CP001486_1002 1/1 279 333 .. 1 74 [. 28.2 2.9e-08

Alignments of top-scoring domains:
CP001486_0602: domain 1 of 1, from 469 to 534: score 94.5, E = 4.7e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g+a lL++ t+l++ q
CP001486_0 469 AKSAFLATMSHEIRTPMNGVLGTARLLQD---------TTLTSTQ-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+++i r++++ll+++nd+Ld+s+ieag
CP001486_0 505 ----------QHYVQVINRSGRSLLAILNDVLDYSKIEAG 534

CP001486_0576: domain 1 of 1, from 479 to 544: score 91.9, E = 2.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ efla +sHELRTPL++++g ++lL++ t+l++eq
CP001486_0 479 VRAEFLAKMSHELRTPLNGVLGVSQLLKR---------TPLNDEQ-- 514

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + ++ +++e+ll+ +nd+Ld+sr+e+g
CP001486_0 515 ----------REHVAVLCSSGEHLLAVLNDILDFSRLEQG 544

CP001486_0237: domain 1 of 1, from 230 to 295: score 61.6, E = 1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+++++HEL+TPLt++r +ae +l+ + eq+
CP001486_0 230 REKRFTRMAAHELKTPLTVLRVNAENALR----------STNQEQL- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le+i + +er +rLi +lL l++ e+
CP001486_0 266 ----------KQDLERIFKGIERTDRLIHQLLMLAKVEST 295

CP001486_0787: domain 1 of 1, from 269 to 337: score 55.8, E = 4.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+L+TPL aI+g a +L + + +ls e++
CP001486_0 269 TRTTLLASVSHDLKTPLGAIIGSATTLTD-------PSLHLSTETQ- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l +i +++erl+r + lLd++r a
CP001486_0 308 ----------QELLTSIAEQGERLNRSLTKLLDITRYTAS 337

CP001486_0017: domain 1 of 1, from 299 to 366: score 52.9, E = 2.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+an+sHELR P taI+g a++ l+ + ++++
CP001486_0 299 QQKEFFANVSHELRSPATAILGEAQITLR---------SRHNSDD-- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyr+ l +i ++ae+l i+dlL l r ++
CP001486_0 335 --------EYRQTLLRISESAEQLAFRIEDLLMLIRHDER 366

CP001486_0606: domain 2 of 2, from 563 to 631: score 41.9, E = 3.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l+HEL++PL+a+++y+ ++ l +e++ q+
CP001486_0 563 VVGQTMTSLAHELNQPLSAMSAYLFSARLAL-------EEAPQAQL- 601

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ i++ +er+ +++n l+ ++r +
CP001486_0 602 ----------ATSLDHIENLTERMGKIVNSLRHFARKNSS 631

CP001486_1002: domain 1 of 1, from 279 to 333: score 28.2, E = 2.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l l HELRTP+t++ +++e L+ ++ +els++
CP001486_1 279 ERRFILQLLTHELRTPITSLGFTVESLRSQF-------DELSPKA-- 316

peLRledpeyreyletilreaerllrL<-*
+e l ++ + +rl +L
CP001486_1 317 ----------QESLWRLMADHQRLAQL 333


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-15 1 0|=
-14 9 0|===
-13 20 0|=======
-12 58 22|=======*============
-11 117 119|=======================================*
-10 168 220|======================================================== *
-9 174 228|==========================================================*
-8 139 170|=============================================== *
-7 121 107|===================================*=====
-6 61 61|====================*
-5 55 33|==========*========
-4 20 18|=====*=
-3 19 9|==*====
-2 15 5|=*===
-1 9 2|*==
> 0 18 -|======


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 128.6809
P(chi-square) = 8.678e-23

Total sequences searched: 1004

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: