Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

6 accessions found for Burkholderia glumae BGR1  

Data for CP001503  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001503.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001503_1039 CDS_1179690-1183436 117.6 4.4e-33 2
CP001503_1109 CDS_1262964-1264274 93.7 2.7e-26 1
CP001503_2164 CDS_2486403-2487905 89.5 4.2e-25 1
CP001503_1135 CDS_1295878-1292330 80.6 1.4e-22 1
CP001503_1123 CDS_1279007-1281328 73.4 1.5e-20 1
CP001503_2165 CDS_2487893-2489839 72.6 2.5e-20 1
CP001503_2851 CDS_3395085-3396662 64.5 4.8e-18 1
CP001503_2489 CDS_2991281-2988351 61.8 3e-17 1
CP001503_2364 CDS_2840914-2839772 57.9 3.6e-16 1
CP001503_0043 CDS_52979-51426 57.5 4.9e-16 1
CP001503_2864 CDS_3418590-3417232 57.0 6.8e-16 1
CP001503_2819 CDS_3361434-3360115 56.6 8.6e-16 1
CP001503_1132 CDS_1290775-1289672 56.5 9.4e-16 1
CP001503_2179 CDS_2509075-2505662 56.5 9.5e-16 1
CP001503_2629 CDS_3144580-3143267 48.3 1.9e-13 1
CP001503_1421 CDS_1639727-1640884 48.1 2.1e-13 1
CP001503_3255 CDS_3870458-3868047 40.3 3.5e-11 1
CP001503_1275 CDS_1463922-1462558 39.0 8.3e-11 1
CP001503_2348 CDS_2819551-2822055 35.9 6.2e-10 1
CP001503_3046 CDS_3628996-3627008 35.0 1.1e-09 1
CP001503_2086 CDS_2391513-2389063 30.9 1.6e-08 1
CP001503_2119 CDS_2432108-2430702 26.9 2.3e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001503_1109 1/1 206 272 .. 1 87 [] 93.7 2.7e-26
CP001503_2164 1/1 242 310 .. 1 87 [] 89.5 4.2e-25
CP001503_1135 1/1 487 555 .. 1 87 [] 80.6 1.4e-22
CP001503_1123 1/1 383 448 .. 1 87 [] 73.4 1.5e-20
CP001503_2165 1/1 139 206 .. 1 87 [] 72.6 2.5e-20
CP001503_1039 2/2 878 944 .. 1 87 [] 66.3 1.6e-18
CP001503_2851 1/1 278 343 .. 1 87 [] 64.5 4.8e-18
CP001503_2489 1/1 678 759 .. 1 87 [] 61.8 3e-17
CP001503_2364 1/1 152 220 .. 1 87 [] 57.9 3.6e-16
CP001503_0043 1/1 239 304 .. 1 87 [] 57.5 4.9e-16
CP001503_2864 1/1 233 298 .. 1 87 [] 57.0 6.8e-16
CP001503_2819 1/1 214 279 .. 1 87 [] 56.6 8.6e-16
CP001503_1132 1/1 144 209 .. 1 87 [] 56.5 9.4e-16
CP001503_2179 1/1 507 572 .. 1 87 [] 56.5 9.5e-16
CP001503_1039 1/2 323 389 .. 1 87 [] 51.3 2.7e-14
CP001503_2629 1/1 219 277 .. 1 87 [] 48.3 1.9e-13
CP001503_1421 1/1 151 217 .. 1 87 [] 48.1 2.1e-13
CP001503_3255 1/1 541 613 .. 1 87 [] 40.3 3.5e-11
CP001503_1275 1/1 234 293 .. 1 87 [] 39.0 8.3e-11
CP001503_2348 1/1 587 657 .. 1 87 [] 35.9 6.2e-10
CP001503_3046 1/1 416 478 .. 1 81 [. 35.0 1.1e-09
CP001503_2086 1/1 587 653 .. 1 87 [] 30.9 1.6e-08
CP001503_2119 1/1 241 298 .. 1 79 [. 26.9 2.3e-07

Alignments of top-scoring domains:
CP001503_1109: domain 1 of 1, from 206 to 272: score 93.7, E = 2.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL+TPLt+++g++e+L+e +ls+++r
CP001503_1 206 MRRDFVANVSHELKTPLTVLSGFLETLRE---------LPLSDDER- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ ++++a r+++++ dlL l+++e +
CP001503_1 243 ----------ARYLDMMEQQASRMRKIVTDLLVLAKLEGE 272

CP001503_2164: domain 1 of 1, from 242 to 310: score 89.5, E = 4.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fl+++sHELRTPL++Ir+++ lLl++ld +el+ eq
CP001503_2 242 LKTRFLSDMSHELRTPLSSIRALSNLLLNRLD------GELTGEQ-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i+++ae l +++ndlLdl++ieag
CP001503_2 281 ----------ERQVLLIRKSAEDLTDIVNDLLDLAKIEAG 310

CP001503_1135: domain 1 of 1, from 487 to 555: score 80.6, E = 1.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ + +a lL+e + ++l++eq
CP001503_1 487 YKSEFLANMSHELRTPLNSSLILARLLQE------NRTGNLTDEQ-- 525

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y eti+ + ll Lind+Ldls+ eag
CP001503_1 526 ----------VRYAETIHASNSDLLVLINDILDLSKVEAG 555

CP001503_1123: domain 1 of 1, from 383 to 448: score 73.4, E = 1.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+la +sHELRTPL++I g +e++++ + + + q
CP001503_1 383 LKDELLAIVSHELRTPLNVIYGWVEVMRN---------PVAEALQ-- 418

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++ i+r+a++l+r++ dlLd s + +g
CP001503_1 419 ----------RQAIDAIDRSARSLSRMVADLLDASSLATG 448

CP001503_2165: domain 1 of 1, from 139 to 206: score 72.6, E = 2.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla+l+HELR+PL+ Ir ++el+ ++ +++ +
CP001503_2 139 RKDQFLATLAHELRNPLAPIRNAIELMDPKY-------QAAEALV-- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++r++++l+rL++dlLd sri +g
CP001503_2 177 ----------HDARMIARRQVDHLSRLVDDLLDVSRITHG 206

CP001503_1039: domain 2 of 2, from 878 to 944: score 66.3, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l+HELR+PL+ +r ++elL + ++ ++ +
CP001503_1 878 QKDEFLAMLAHELRNPLAPVRHAIELLAA---------APDDAALQ- 914

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++ r+++ l rL++dlL+ sri g
CP001503_1 915 ----------ARVTPILMRQTDILGRLVEDLLEVSRITRG 944

CP001503_2851: domain 1 of 1, from 278 to 343: score 64.5, E = 4.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ ael+l+ ++ s+e
CP001503_2 278 LQKRFIADAAHQMKTPLAGLRTQAELALR---------HDVSAEV-- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le i ++ + rL+ +lL l+r+e+
CP001503_2 314 ----------ARSLEQIATSSSQAARLVTQLLALARAENR 343

CP001503_2489: domain 1 of 1, from 678 to 759: score 61.8, E = 3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPLt+I g++++L l++ + ++ ++
CP001503_2 678 LRNSLLSAISHDLRTPLTTIVGFSSMLAG-----LHEAAGQGGAGAA 719

peLR.....ledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ re++e i++ea r+ ++ +lLd++r++ag
CP001503_2 720 GAAEsaasrE-----RELVEAIHDEALRMTGIVTNLLDMARLQAG 759

CP001503_2364: domain 1 of 1, from 152 to 220: score 57.9, E = 3.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++nl+HE+++PL +Irg+a+lL+ el +e+ ++
CP001503_2 152 VNKHLIRNLAHEIKNPLGGIRGAAQLLEFEL-------GERERGEL- 190

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+++i++e++rl+ L+++lL+ r +
CP001503_2 191 ----------REYTQVIIKESDRLQTLVDRLLEPHRHPHI 220

CP001503_0043: domain 1 of 1, from 239 to 304: score 57.5, E = 4.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+LRTPLta++++ae + +++++q+
CP001503_0 239 AQRKFIADAAHQLRTPLTAVKLHAEHAAV----------ARDPQQT- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ +a+r rL n+lL l+r+e g
CP001503_0 275 ----------LAAVHELRAAADRAVRLSNQLLSLARAEPG 304

CP001503_2864: domain 1 of 1, from 233 to 298: score 57.0, E = 6.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a+++H+LRTPLt + + ++ +++ ++eq+
CP001503_2 233 MQRRFIADAAHQLRTPLTLLGTQLQYARR----------QHDPEQV- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ + r+ ++l +L n+lL+l+++ea
CP001503_2 269 ----------QDTLKAMARSNRSLVALTNQLLTLAQAEAA 298

CP001503_2819: domain 1 of 1, from 214 to 279: score 56.6, E = 8.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+a++ a+l + ++++e+r
CP001503_2 214 TQKAFVADAAHELRTPLAAVQIQAQLVAR----------AQDDETR- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l +++ + r rL ++lL l+r e
CP001503_2 250 ----------REALADLQNGVTRATRLAEQLLALARSEPD 279

CP001503_1132: domain 1 of 1, from 144 to 209: score 56.5, E = 9.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a l H+LRTPL a+++ ae L + + s q+
CP001503_1 144 ANEMLMAVLGHDLRTPLGAVLASAEYLMR----------DPSGTQT- 179

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i++++ r+ r++ +lL l+r++ g
CP001503_1 180 ----------AAVAARIKSSSLRMARMVHQLLNLARLQGG 209

CP001503_2179: domain 1 of 1, from 507 to 572: score 56.5, E = 9.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sHE+RTPL+a++g++el+ ++++++
CP001503_2 507 MRTGFIAAISHEIRTPLSALIGHLELMAG---------EPMPDPV-- 542

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i++ +++ll+ nd+Ld+sr+ g
CP001503_2 543 ----------AARLRIIEQVSRSLLATANDMLDMSRLSIG 572

CP001503_1039: domain 1 of 2, from 323 to 389: score 51.3, E = 2.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++n+sHE+RTPLt ++g +e + + ++ +e +
CP001503_1 323 GKTAFFSNISHEFRTPLTLLLGPLEDACA---------HAGVPEPV- 359

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l++++ + rllrL+n lLd+++ieag
CP001503_1 360 ----------REQLRIAHGNSARLLRLVNALLDFAQIEAG 389

CP001503_2629: domain 1 of 1, from 219 to 277: score 48.3, E = 1.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la+++H+LRTPL+ +r+ ae++ +
CP001503_2 219 DRAVMLAGVAHDLRTPLARMRLRAEMMDD------------------ 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + + r++++++++++++L ++ +
CP001503_2 248 ----------MRLRDGVVRDVDSMSHIVDQFLVFAHGGVD 277

CP001503_1421: domain 1 of 1, from 151 to 217: score 48.1, E = 2.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ +l+H+LR PL +++ ae+Ll+ d++l +
CP001503_1 151 MRDLFAGALAHDLRSPLGVVLISAEILLR--------DDTLVPSS-- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ++r++ r+ r+i+dlL ++r + g
CP001503_1 188 ----------RHAAVYAQRSGLRIKRMIDDLLIFTRTRLG 217

CP001503_3255: domain 1 of 1, from 541 to 613: score 40.3, E = 3.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l a ++++ ++l
CP001503_3 541 AWGEVARRLAHEIKNPLTPIQLSAERLQMKL----ADKLAAPDAEVL 583

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ti +++ + r+++d+++++r
CP001503_3 584 KRG----------ATTIVNQVAAMKRMVDDFREYARTPPA 613

CP001503_1275: domain 1 of 1, from 234 to 293: score 39.0, E = 8.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ +r+ +e+ +
CP001503_1 234 DRALMLAGISHDLRTPLARLRLETEMSPSD----------------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++e+++r+i + d++r ++
CP001503_1 264 ----------QATKDAMVDDIEQMDRIIAAFIDYARPLQQ 293

CP001503_2348: domain 1 of 1, from 587 to 657: score 35.9, E = 6.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++++HEL++PL+aI y++ + l +++ ++e++
CP001503_2 587 TMGEMASSIAHELNQPLAAINNYCSGTVA-----LVKSGRGTAETL- 627

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le+ ++a r ++ +++++ + ++
CP001503_2 628 ----------LPALEKTAQQALRAGMIVKRIREFVKRSEP 657

CP001503_3046: domain 1 of 1, from 416 to 478: score 35.0, E = 1.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+a+r +++ + +++e+ ++
CP001503_3 416 ALGQMAAGITHELNQPLAALRSFSDNTRV--------LLDRGEQAAA 454

peLRledpeyreyletilreaerllrLindlLdl<-*
re le i + +er+ ++ n+l +
CP001503_3 455 ----------RENLEAIASLTERMGKITNQLKLF 478

CP001503_2086: domain 1 of 1, from 587 to 653: score 30.9, E = 1.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e l lsH++R P ++I++++ + + + ++++ q
CP001503_2 587 QREEALHLLSHDMRSPQASILALVRTERQ--------RRDAGPAQ-- 623

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l +i+r a+r l L +++ +l+r+e++
CP001503_2 624 ----------RELLARIERHAQRALTLADEFVQLARAESQ 653

CP001503_2119: domain 1 of 1, from 241 to 298: score 26.9, E = 2.3e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++H++RTPL+ + + +e+L ++ + q
CP001503_2 241 TMQRFIADAAHQMRTPLARLDAQIEMLSH---------EPDAARQ-- 276

peLRledpeyreyletilreaerllrLindlL<-*
r l t++ rL +lL
CP001503_2 277 ----------RARLATLRATCSDVGRLTGQLL 298


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 6 0|=
-13 33 2|*==
-12 124 75|======*=====
-11 288 389|=========================== *
-10 508 722|=============================================== *
-9 639 746|==========================================================*
-8 610 558|==================================================*=====
-7 458 352|===============================*==========
-6 255 202|==================*=====
-5 158 111|==========*====
-4 96 59|=====*===
-3 36 31|==*=
-2 27 16|=*=
-1 14 8|*=
0 8 4|*
1 0 2|*
2 1 1|*
> 3 26 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 240.3578
P(chi-square) = 5.305e-315

Total sequences searched: 3287

Whole sequence top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 23
Satisfying E cutoff: 23
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: