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Classification of phyla is from NCBI page
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76 projects found  

6 accessions found for Burkholderia glumae BGR1  

Data for CP001504  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001504.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001504_1080 CDS_1524962-1520712 153.9 1e-43 2
CP001504_2056 CDS_2795721-2797550 82.9 1.9e-23 1
CP001504_1391 CDS_1945240-1943726 68.4 2.5e-19 1
CP001504_1876 CDS_2546195-2542656 65.7 1.4e-18 1
CP001504_1649 CDS_2270688-2269534 59.2 9.8e-17 1
CP001504_1064 CDS_1494237-1492423 55.7 9.8e-16 1
CP001504_1695 CDS_2328807-2327128 55.6 1e-15 1
CP001504_1877 CDS_2547859-2546192 48.3 1.2e-13 1
CP001504_1693 CDS_2324093-2326483 47.0 2.8e-13 1
CP001504_0923 CDS_1302237-1301152 45.6 7.4e-13 1
CP001504_0152 CDS_188400-190721 44.6 1.4e-12 1
CP001504_1469 CDS_2049514-2050302 35.8 4.2e-10 1
CP001504_1549 CDS_2142993-2141746 30.1 1.7e-08 1
CP001504_1918 CDS_2610023-2608542 28.8 4.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001504_2056 1/1 256 324 .. 1 87 [] 82.9 1.9e-23
CP001504_1080 2/2 1056 1122 .. 1 87 [] 79.8 1.5e-22
CP001504_1080 1/2 334 401 .. 1 87 [] 74.1 6.1e-21
CP001504_1391 1/1 268 336 .. 1 87 [] 68.4 2.5e-19
CP001504_1876 1/1 652 717 .. 1 87 [] 65.7 1.4e-18
CP001504_1649 1/1 168 233 .. 1 87 [] 59.2 9.8e-17
CP001504_1064 1/1 235 300 .. 1 87 [] 55.7 9.8e-16
CP001504_1695 1/1 336 401 .. 1 87 [] 55.6 1e-15
CP001504_1877 1/1 173 237 .. 1 87 [] 48.3 1.2e-13
CP001504_1693 1/1 526 594 .. 1 87 [] 47.0 2.8e-13
CP001504_0923 1/1 134 198 .. 1 87 [] 45.6 7.4e-13
CP001504_0152 1/1 155 216 .. 5 87 .] 44.6 1.4e-12
CP001504_1469 1/1 28 95 .. 1 87 [] 35.8 4.2e-10
CP001504_1549 1/1 213 266 .. 1 82 [. 30.1 1.7e-08
CP001504_1918 1/1 277 341 .. 1 87 [] 28.8 4.2e-08

Alignments of top-scoring domains:
CP001504_2056: domain 1 of 1, from 256 to 324: score 82.9, E = 1.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fl+++sHELRTPLt+++g+++lL ++ ++l+++
CP001504_2 256 LKDDFLSTVSHELRTPLTSVKGAVDLLAGGAA------GALPAPA-- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++++r +erl rLi+d+Ld +++ea
CP001504_2 295 ----------QKLVDIARRNGERLGRLIDDVLDVAKLEAD 324

CP001504_1080: domain 2 of 2, from 1056 to 1122: score 79.8, E = 1.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l+HELR+PL+ I ++e+Ll+ +ls++++
CP001504_1 1056 QKDEFLAMLAHELRNPLAPIANASEVLLR---------IPLSDPKL- 1092

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++i+r++ +l+rL++dlLd sri +g
CP001504_1 1093 ----------SFATDIIRRQITQLSRLVDDLLDVSRITQG 1122

CP001504_1080: domain 1 of 2, from 334 to 401: score 74.1, E = 6.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f+ n+sHE+RTPLt ++g +e Ll+ ++ +
CP001504_1 334 AKTAFFTNVSHEFRTPLTLMLGPIEELLA---------APDPVRP-- 369

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++l++++r + rllrL+n lLd+sr+eag
CP001504_1 370 --------EASQALQVAHRNGLRLLRLVNSLLDFSRLEAG 401

CP001504_1391: domain 1 of 1, from 268 to 336: score 68.4, E = 2.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++anlsH+LRTPLta+ gy+e+L ++ ++l + +r
CP001504_1 268 QRRELIANLSHDLRTPLTALHGYLETLALKG-------AALAPAER- 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+++l +++ rL + l +l+r+e+g
CP001504_1 307 ----------ERYLSIALAQSDKVGRLARALFELARLESG 336

CP001504_1876: domain 1 of 1, from 652 to 717: score 65.7, E = 1.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+a +sHELRTPL++++g a lLl+ ++ +
CP001504_1 652 AKNQFMARMSHELRTPLNGVLGPAGLLLD---------CPREGAE-- 687

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+ i++++ l+ i+++Ld+++iea
CP001504_1 688 ----------RELLQGIRESGVALRTVIEQILDIAQIEAD 717

CP001504_1649: domain 1 of 1, from 168 to 233: score 59.2, E = 9.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ ++sHELRTPL+ +r+++e+L++ ++ ++e
CP001504_1 168 AQRDLTNGISHELRTPLARVRFALEALRD---------PASDAER-- 203

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++i +++ l++Li+ L+++r+e
CP001504_1 204 ----------HAALDSIAQDVTELDELIDMSLTYARLEYS 233

CP001504_1064: domain 1 of 1, from 235 to 300: score 55.7, E = 9.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl ++sHELRTPL aI+g +e+Ll+ ++se
CP001504_1 235 AKNAFLGMVSHELRTPLQAISGSIEILLA---------RAQSEAN-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++++a +l++L+ +l d+ ++++
CP001504_1 271 ----------LKTIRRLQNSALSLEALVKELTDYIKLRST 300

CP001504_1695: domain 1 of 1, from 336 to 401: score 55.6, E = 1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+ ++sHELR PL+aI+ +el+++ ++ ++
CP001504_1 336 AMDHFITTVSHELRSPLNAILSWCELMRR---------SPEPSLV-- 371

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e+i r +++l ++++dlLd i +g
CP001504_1 372 ----------TRAGEVINRNGRQLAHMVDDLLDSGAIVTG 401

CP001504_1877: domain 1 of 1, from 173 to 237: score 48.3, E = 1.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fla++ HE RTPL+a+ g a+l+ + +el+
CP001504_1 173 ERADFLAMVTHEVRTPLAAVAGIASLMCHG--------GELPN---- 207

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+++e+l rL+n++Ldl+riea+
CP001504_1 208 ----------ALSATALLESTEHLARLLNEVLDLARIEAN 237

CP001504_1693: domain 1 of 1, from 526 to 594: score 47.0, E = 2.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL I gya+lL+e + ++lse
CP001504_1 526 ELEGFSYTVSHDLRAPLRHIVGYADLLRE------MEMANLSERG-- 564

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+e+i ++a+ +L++dlL +sr++
CP001504_1 565 ----------RHYVERIVNSARLGGKLVDDLLAFSRMGRS 594

CP001504_0923: domain 1 of 1, from 134 to 198: score 45.6, E = 7.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + a++sHELRTP+t +rg ++ L + + +++
CP001504_0 134 EQTFWNAAISHELRTPVTILRGRLQGLVD---------GVFTPDA-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +l ++e l+rLi+dl+ s e+g
CP001504_0 170 -----------SQFRNLLGQVEGLSRLIEDLRVVSLVESG 198

CP001504_0152: domain 1 of 1, from 155 to 216: score 44.6, E = 1.4e-12
*->flanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLR
+la +sHE RTPL++ +g++elL ++l +eq
CP001504_0 155 LLAVVSHEVRTPLHGAMGNLELLAY---------SPLMPEQ------ 186

ledpeyreyletilreaerllrLindlLdlsrieag<-*
re + ti++ ++ ll L++dlL+ + +
CP001504_0 187 ------RERVVTIRHTLDELLGLLDDLLEVEHLKRL 216

CP001504_1469: domain 1 of 1, from 28 to 95: score 35.8, E = 4.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++ l+ +sH+LR PL+a+ a +L+++l ++ +
CP001504_1 28 AREQALSVASHDLRSPLNAMHSWAYVLERQL-------PPGDGSL-- 65

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ i+ +e+ +Li Ld r+++
CP001504_1 66 ----------QRALDGIRIGIEQQTKLIGSALDAPRADTR 95

CP001504_1549: domain 1 of 1, from 213 to 266: score 30.1, E = 1.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+l+H+LR P+t ++ a+lL +
CP001504_1 213 ERAMMLAGLAHDLRAPITRMQVRADLLPD------------------ 241

peLRledpeyreyletilreaerllrLindlLdls<-*
+ + lr+ae l+r++ ++Ld++
CP001504_1 242 ----------QATRDGFLRDAEALSRIVTQFLDFA 266

CP001504_1918: domain 1 of 1, from 277 to 341: score 28.8, E = 4.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a ++HE+R+P a+r+ ae +l+ ++
CP001504_1 277 TLGKLAAQVAHEIRNPAGAMRLKAENALA----------GDDARR-- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ti+ ++ r++ ++ lL l+r +
CP001504_1 312 ----------EAALRTIIVQLGRIETQVASLLALTRPVTV 341


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 4 0|=
-13 14 1|*=
-12 56 47|======*=
-11 158 246|======================= *
-10 279 457|======================================== *
-9 406 472|==========================================================*
-8 403 353|==================================================*=======
-7 287 222|===============================*=========
-6 211 128|==================*============
-5 101 70|=========*=====
-4 55 37|=====*==
-3 32 19|==*==
-2 24 10|=*==
-1 11 5|*=
0 10 2|*=
1 5 1|*
2 3 0|=
3 2 0|=
4 0 0|
5 0 0|
> 6 18 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 242.9571
P(chi-square) = 2.652e-315

Total sequences searched: 2079

Whole sequence top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: