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Classification of phyla is from NCBI page
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132 projects found  

5 accessions found for Methylobacterium extorquens AM1  

Data for CP001511  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001511.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001511_0329 CDS_365130-368801 101.2 7.1e-29 1
CP001511_0330 CDS_368803-371715 100.5 1.1e-28 1
CP001511_0582 CDS_643100-639882 87.9 4.2e-25 1
CP001511_1109 CDS_1206518-1208557 73.7 4.4e-21 1
CP001511_0865 CDS_948920-950236 57.1 2.3e-16 1
CP001511_0842 CDS_928191-930260 35.2 3.4e-10 1
CP001511_0292 CDS_317308-318765 33.9 8.4e-10 1
CP001511_0872 CDS_957488-956106 33.2 1.3e-09 1
CP001511_0143 CDS_154968-156302 29.3 1.7e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001511_0329 1/1 735 800 .. 1 87 [] 101.2 7.1e-29
CP001511_0330 1/1 486 551 .. 1 87 [] 100.5 1.1e-28
CP001511_0582 1/1 584 650 .. 1 87 [] 87.9 4.2e-25
CP001511_1109 1/1 184 249 .. 1 87 [] 73.7 4.4e-21
CP001511_0865 1/1 226 291 .. 1 87 [] 57.1 2.3e-16
CP001511_0842 1/1 327 394 .. 1 87 [] 35.2 3.4e-10
CP001511_0292 1/1 260 326 .. 1 87 [] 33.9 8.4e-10
CP001511_0872 1/1 231 297 .. 1 87 [] 33.2 1.3e-09
CP001511_0143 1/1 235 293 .. 1 87 [] 29.3 1.7e-08

Alignments of top-scoring domains:
CP001511_0329: domain 1 of 1, from 735 to 800: score 101.2, E = 7.1e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks f+a++sHE+RTPL++++g+ae+L t+l++ q
CP001511_0 735 AKSTFVATMSHEIRTPLNGVIGMAEVLSG---------TDLDDRQ-- 770

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
reyl ti+++++ ll++++d+Ld+s++eag
CP001511_0 771 ----------REYLATIRECGDALLSIVSDILDFSKLEAG 800

CP001511_0330: domain 1 of 1, from 486 to 551: score 100.5, E = 1.1e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ef+a++sHE+RTPL++++g+a+lL + t+l++ q
CP001511_0 486 AKTEFVATMSHEIRTPLNGVLGMASLLSD---------TPLDDRQ-- 521

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+ ti+r+++ ll++++d+Ld+s++eag
CP001511_0 522 ----------RHYVGTIRRCGDALLSIVDDILDFSKLEAG 551

CP001511_0582: domain 1 of 1, from 584 to 650: score 87.9, E = 4.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPL++I gya lL + ++ l++
CP001511_0 584 AKSDFLATMSHEIRTPLNGIAGYAGLLMT--------EDGLPARS-- 620

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +e+i+ +++ l ++d+Ld+s+ieag
CP001511_0 621 ----------RRHVERIQTASQVLKTVVDDVLDFSKIEAG 650

CP001511_1109: domain 1 of 1, from 184 to 249: score 73.7, E = 4.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+a++sHELRTPL+aI+g+++lL e t l+++q
CP001511_1 184 AKSRFMASVSHELRTPLNAIIGMSDLLGE---------TRLDADQ-- 219

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +t+ +++ ll+ in +Ld+sr+e g
CP001511_1 220 ----------TEMNRTVSTAGRALLAHINTILDFSRLEVG 249

CP001511_0865: domain 1 of 1, from 226 to 291: score 57.1, E = 2.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e +a ++HELRTPL+++++ a+++ + ++ ++
CP001511_0 226 HEREVTAFAAHELRTPLAGLKTQAQVAMA---------ATDPDVV-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ il +++r rL+++lLd +r++a
CP001511_0 262 ----------KAALRQILAAVDRTTRLVRQLLDAARLDAA 291

CP001511_0842: domain 1 of 1, from 327 to 394: score 35.2, E = 3.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L+ +rg+++lL++ + +++ ++
CP001511_0 327 ALGQLTGGIAHDFNNMLSIVRGNLDLLRR--------RLDQGRRDV- 364

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl+ +++ + r +L ++lL +sr e
CP001511_0 365 ----------GTYLDAADDGVVRAADLTRRLLAFSRREPV 394

CP001511_0292: domain 1 of 1, from 260 to 326: score 33.9, E = 8.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++++HE+++PL ++ ++++L++ +e+++
CP001511_0 260 SLGRLASGMAHEINNPLGGLFNAIDTLKA--------HGERPDVR-- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ ++r ++ +++ ++ L r++
CP001511_0 297 ----------RRSLDLVERGLKGIRDVVRATLVTHRADRD 326

CP001511_0872: domain 1 of 1, from 231 to 297: score 33.2, E = 1.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +++H+LRTPLt +r+ +e ++ ++++ e++
CP001511_0 231 EVRGVGDAVAHDLRTPLTRLRLRLERGRD---------QARDIEEL- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++ l +++ l+++ +L + ie+g
CP001511_0 268 ----------RQAVDQGLVWIDQTLDMVTAVLRIGEIEHG 297

CP001511_0143: domain 1 of 1, from 235 to 293: score 29.3, E = 1.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a++sH+LRTP++ +r+ ++ ++
CP001511_0 235 ERTLAFAAVSHDLRTPIARLRLRLDRVED------------------ 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++ ++++++ L + r +a
CP001511_0 264 ----------VDERRAMAADLDEMQAMVEATLAYLRGDAD 293


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-15 1 0|=
-14 4 0|=
-13 24 0|======
-12 64 26|======*=========
-11 136 138|==================================*
-10 204 256|=================================================== *
-9 220 265|======================================================= *
-8 195 198|=================================================*
-7 135 125|===============================*==
-6 87 71|=================*====
-5 39 39|=========*
-4 21 21|=====*
-3 17 11|==*==
-2 8 5|=*
-1 2 3|*
> 0 10 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 78.5607
P(chi-square) = 9.607e-13

Total sequences searched: 1167

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: