Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

5 accessions found for Methylobacterium extorquens AM1  

Data for CP001511  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001511.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001511_0971 CDS_1071112-1069040 43.3 5.2e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001511_0971 1/1 480 548 .. 1 70 [] 43.3 5.2e-13

Alignments of top-scoring domains:
CP001511_0971: domain 1 of 1, from 480 to 548: score 43.3, E = 5.2e-13
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
E +RIARELHD vgQ+ ++++l+l ++rll + ++ea ++++
CP001511_0 480 EQRRIARELHDQVGQTVTGLSLGLKSLERLL--AGGEAdEAGRQVQW 524

irelarealaevRrllgdLRpaal<-*
+++la e +++ r++ dLRp+al
CP001511_0 525 LQALAGEIGRDIHRAAVDLRPTAL 548


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 5 0|==
-13 13 0|====
-12 35 13|===*=====
-11 41 106|=========== *
-10 145 248|===================================== *
-9 213 281|====================================================== *
-8 160 217|======================================== *
-7 160 136|=================================*======
-6 103 77|===================*======
-5 124 41|==========*====================
-4 66 21|=====*===========
-3 32 11|==*=====
-2 28 5|=*=====
-1 17 2|*====
0 4 1|*
1 9 0|===
2 5 0|==
3 1 0|=
4 1 0|=
> 5 5 -|==


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 547.0925
P(chi-square) = 0

Total sequences searched: 1167

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: