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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

5 accessions found for Methylobacterium extorquens AM1  

Data for CP001511  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: CP001511.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001511_1102 CDS_1197474-1195414 123.4 2.1e-42 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001511_1102 1/1 499 579 .. 1 85 [] 123.4 2.1e-42

Alignments of top-scoring domains:
CP001511_1102: domain 1 of 1, from 499 to 579: score 123.4, E = 2.1e-42
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
EL+HRVKNtLA+VQ+ia+ ++R+a++ldef+++F++R+++Lsr+H L
CP001511_1 499 ELHHRVKNTLATVQAIAAASSRTATDLDEFRDSFADRIVSLSRTHTL 545

VpLtrseWagAdLreLleaeLaPyggedaeRitlsGPd<-*
L + +W+ +dLr+L++ e a+y+ a+R++++G +
CP001511_1 546 --LREQSWEHVDLRQLVAGETAAYDE--AGRVRIEGAE 579


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 2 0|=
-13 28 0|=======
-12 101 0|==========================
-11 117 9|==*===========================
-10 171 120|=============================*=============
-9 179 298|============================================= *
-8 195 310|================================================= *
-7 151 208|====================================== *
-6 85 113|====================== *
-5 60 56|=============*=
-4 30 26|======*=
-3 20 12|==*==
-2 14 5|=*==
-1 4 2|*
0 5 1|*=
1 1 0|=
2 0 0|
3 2 0|=
4 0 0|
5 0 0|
> 6 2 -|=


% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 1362.9307
P(chi-square) = 0

Total sequences searched: 1167

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: