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Classification of phyla is from NCBI page
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132 projects found  

2 accessions found for Bartonella grahamii as4aup  

Data for CP001562  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001562.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001562_0494 CDS_687394-685073 91.0 8e-26 1
CP001562_0028 CDS_37757-35292 74.7 3.4e-21 1
CP001562_0054 CDS_82492-80708 70.9 4e-20 1
CP001562_0343 CDS_478214-479920 51.9 1e-14 1
CP001562_0452 CDS_626954-628336 44.6 1.2e-12 1
CP001562_0593 CDS_807563-809830 44.5 1.2e-12 1
CP001562_1053 CDS_1332476-1329942 42.6 4.3e-12 1
CP001562_0477 CDS_662150-660810 32.7 2.6e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001562_0494 1/1 546 615 .. 1 87 [] 91.0 8e-26
CP001562_0028 1/1 592 660 .. 1 87 [] 74.7 3.4e-21
CP001562_0054 1/1 358 423 .. 1 87 [] 70.9 4e-20
CP001562_0343 1/1 338 400 .. 8 87 .] 51.9 1e-14
CP001562_0452 1/1 240 306 .. 1 87 [] 44.6 1.2e-12
CP001562_0593 1/1 510 581 .. 1 87 [] 44.5 1.2e-12
CP001562_1053 1/1 468 534 .. 1 87 [] 42.6 4.3e-12
CP001562_0477 1/1 243 301 .. 1 87 [] 32.7 2.6e-09

Alignments of top-scoring domains:
CP001562_0494: domain 1 of 1, from 546 to 615: score 91.0, E = 8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g+++++l + ++l+++
CP001562_0 546 AKSEFLANMSHELRTPLNAILGFSDIMLQSTF------GPLGSQR-- 584

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + i++++ +ll Lind+Ld+s+ieag
CP001562_0 585 ---------YKEYMHDIYNSGTHLLTLINDILDMSKIEAG 615

CP001562_0028: domain 1 of 1, from 592 to 660: score 74.7, E = 3.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ ++s ELRTPLt I+g++++L++ ++ + + q
CP001562_0 592 LRNEFVQHVSYELRTPLTNIIGFSDILRD------QIFGSINKRQ-- 630

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl i++e+ ll+++nd+Ldl+ ++ag
CP001562_0 631 ----------QEYLGHIHSESGTLLNIVNDILDLATLDAG 660

CP001562_0054: domain 1 of 1, from 358 to 423: score 70.9, E = 4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a++sHEL++PLt++r ++e+L +++ee +
CP001562_0 358 TIERFAADVSHELKNPLTSLRSAVETLPL----------AKNEEAQ- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le+i+++++rl+rLi d+ d sr++a+
CP001562_0 394 ----------EKLLEIIQHDVRRLDRLITDISDASRLDAE 423

CP001562_0343: domain 1 of 1, from 338 to 400: score 51.9, E = 1e-14
*->nlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRled
++ HE+RTPL+a++g+ae+++e ++ + e
CP001562_0 338 GVVHEIRTPLNALIGFAEIMRE------GRFGSIENER--------- 369

peyreyletilreaerllrLindlLdlsrieag<-*
yr yl+ i+++++++l Lin+lL+ s+i
CP001562_0 370 --YRGYLRDIISSGKHILLLINQLLECSKINYS 400

CP001562_0452: domain 1 of 1, from 240 to 306: score 44.6, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ n++H+L+TPLt +r ae +l ++++ +
CP001562_0 240 GLRQVSDNIAHDLKTPLTRLRNRAEEALS---------GNKTKLE-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ l++++ e+++l n +L +sriea
CP001562_0 276 ---------YRQVLDRVIAESDQLICTFNAILMISRIEAS 306

CP001562_0593: domain 1 of 1, from 510 to 581: score 44.5, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae ++++++k + ++
CP001562_0 510 AWADIARRIAHEIKNPLTPIQLSAERIRKRYNK-----VITQDREV- 550

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +eti+r++ + r+++++ ++r+ +
CP001562_0 551 ---------FERCIETIIRQVGDIGRMVDEFSSFARMPKP 581

CP001562_1053: domain 1 of 1, from 468 to 534: score 42.6, E = 4.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI++ ++lLl+ t++s++ +
CP001562_1 468 AVGQLAGGIAHDFNNVLTAILMSCDLLLN---------THRSSDPA- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i++ a+r +L+++lL +sr ++
CP001562_1 505 ----------HADLINIKNNANRAAALVQQLLAFSRKQTL 534

CP001562_0477: domain 1 of 1, from 243 to 301: score 32.7, E = 2.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sH+LRT Lt ++ + l +++d
CP001562_0 243 QRTMMLSGVSHDLRTILTRFKLQLALVNTDFD--------------- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++++ ++++++d L ++r e
CP001562_0 275 -------------IKPLEQDVSDMQNMLEDYLAFARGEGS 301


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 8 0|==
-13 35 1|*=====
-12 89 39|======*========
-11 187 205|================================ *
-10 315 381|===================================================== *
-9 291 394|================================================= *
-8 270 295|============================================= *
-7 232 186|==============================*========
-6 129 107|=================*====
-5 81 58|=========*====
-4 33 31|=====*
-3 24 16|==*=
-2 11 8|=*
-1 7 4|*=
0 8 2|*=
1 4 1|*
> 2 13 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 132.1597
P(chi-square) = 1.693e-23

Total sequences searched: 1737

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: