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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

2 accessions found for Bartonella grahamii as4aup  

Data for CP001562  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001562.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001562_1417 CDS_1904241-1902787 63.4 3.1e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001562_1417 1/1 279 349 .. 1 76 [. 63.4 3.1e-18

Alignments of top-scoring domains:
CP001562_1417: domain 1 of 1, from 279 to 349: score 63.4, E = 3.1e-18
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
HR+ N+L ++SSLL LQ ++k+eev + +L +++R+++
CP001562_1 279 DASHRIGNSLGTVSSLLGLQLNRSKNEEV-----RSVLGAARDRIQT 320

mAliHEeLYksedldtvdfseYlekLten<-*
+++ H++L s+d++t ++e+l+ ++++
CP001562_1 321 ISTAHRRLRLSDDMETTFLAEFLSSVVHD 349


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 6 0|=
-13 15 10|=*=
-12 96 114|============== *
-11 390 317|=============================================*==========
-10 387 411|======================================================== *
-9 314 347|============================================= *
-8 207 232|============================== *
-7 113 138|================= *
-6 108 77|==========*=====
-5 42 41|=====*
-4 24 21|==*=
-3 15 11|=*=
-2 11 6|*=
-1 3 3|*
0 1 1|*
1 2 0|=
2 0 0|
3 1 0|=
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 50.7931
P(chi-square) = 4.505e-07

Total sequences searched: 1737

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: