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Classification of phyla is from NCBI page
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264 projects found  

4 accessions found for Yersinia pestis D182038  

Data for CP001589  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001589.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001589_2793 CDS_3547191-3545875 88.2 1.1e-24 1
CP001589_0228 CDS_257588-254769 86.8 2.6e-24 1
CP001589_2952 CDS_3748243-3751035 85.9 4.6e-24 1
CP001589_1062 CDS_1386667-1383887 79.3 3.4e-22 1
CP001589_3113 CDS_3941966-3939630 75.7 3.8e-21 1
CP001589_1780 CDS_2264582-2265967 69.5 2.1e-19 1
CP001589_2388 CDS_3046657-3048084 68.8 3.3e-19 1
CP001589_2620 CDS_3340229-3341785 67.1 1e-18 1
CP001589_2442 CDS_3117771-3116656 67.0 1.1e-18 1
CP001589_1853 CDS_2356418-2360146 65.8 2.4e-18 1
CP001589_0069 CDS_83674-82298 63.6 9.9e-18 1
CP001589_0024 CDS_32936-31887 62.4 2.2e-17 1
CP001589_2342 CDS_2996158-2993756 61.1 5.1e-17 1
CP001589_2611 CDS_3327548-3326199 53.9 5.4e-15 1
CP001589_0124 CDS_150406-151758 53.2 8.8e-15 1
CP001589_3074 CDS_3895055-3896122 46.9 5.5e-13 1
CP001589_3478 CDS_4435625-4438180 40.4 3.7e-11 1
CP001589_1411 CDS_1808476-1809732 36.2 5.6e-10 1
CP001589_0780 CDS_1016372-1017790 28.7 7.9e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001589_2793 1/1 203 269 .. 1 87 [] 88.2 1.1e-24
CP001589_0228 1/1 397 462 .. 1 87 [] 86.8 2.6e-24
CP001589_2952 1/1 291 356 .. 1 87 [] 85.9 4.6e-24
CP001589_1062 1/1 448 513 .. 1 87 [] 79.3 3.4e-22
CP001589_3113 1/1 282 347 .. 1 87 [] 75.7 3.8e-21
CP001589_1780 1/1 238 304 .. 1 87 [] 69.5 2.1e-19
CP001589_2388 1/1 249 317 .. 1 87 [] 68.8 3.3e-19
CP001589_2620 1/1 284 354 .. 1 87 [] 67.1 1e-18
CP001589_2442 1/1 237 301 .. 1 87 [] 67.0 1.1e-18
CP001589_1853 1/1 692 756 .. 1 87 [] 65.8 2.4e-18
CP001589_0069 1/1 238 300 .. 1 87 [] 63.6 9.9e-18
CP001589_0024 1/1 129 194 .. 1 87 [] 62.4 2.2e-17
CP001589_2342 1/1 557 624 .. 1 87 [] 61.1 5.1e-17
CP001589_2611 1/1 228 291 .. 1 87 [] 53.9 5.4e-15
CP001589_0124 1/1 233 293 .. 1 87 [] 53.2 8.8e-15
CP001589_3074 1/1 136 196 .. 1 87 [] 46.9 5.5e-13
CP001589_3478 1/1 497 559 .. 1 87 [] 40.4 3.7e-11
CP001589_1411 1/1 195 255 .. 1 87 [] 36.2 5.6e-10
CP001589_0780 1/1 273 320 .. 19 87 .] 28.7 7.9e-08

Alignments of top-scoring domains:
CP001589_2793: domain 1 of 1, from 203 to 269: score 88.2, E = 1.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ + +el + r
CP001589_2 203 ARRNFFANVSHELRTPLTVLQGYLEMMHD---------QELAGPLR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l t++++++r++ L+ +lL+lsriea
CP001589_2 240 ----------DKALGTMQEQTKRMDGLVKQLLTLSRIEAA 269

CP001589_0228: domain 1 of 1, from 397 to 462: score 86.8, E = 2.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+ l ++sHE+RTPL++ +g++elL++ t+l++ q
CP001589_0 397 RKSDHLTTISHEIRTPLNGALGAVELLQN---------TPLDAGQ-- 432

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ et+++++ +ll++in+lLd+srie+g
CP001589_0 433 ----------MRLAETAHQCSLSLLAIINNLLDFSRIESG 462

CP001589_2952: domain 1 of 1, from 291 to 356: score 85.9, E = 4.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l+ t l++ q
CP001589_2 291 IKSEFLANMSHELRTPLNGVIGFTRQTLK---------TSLTPTQ-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+r+a+ ll +ind+Ld+s++ea
CP001589_2 327 ----------TDYLQTIQRSANNLLCIINDVLDFSKLEAD 356

CP001589_1062: domain 1 of 1, from 448 to 513: score 79.3, E = 3.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
CP001589_1 448 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPQGV-- 483

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
CP001589_1 484 ----------DRLVTAMNNSSGLLLKIISDILDFSKIESE 513

CP001589_3113: domain 1 of 1, from 282 to 347: score 75.7, E = 3.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ tel++eq
CP001589_3 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TELDAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+ +a l ++ nd+ ++ ++e
CP001589_3 318 ----------LKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

CP001589_1780: domain 1 of 1, from 238 to 304: score 69.5, E = 2.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTPLt ++g ++l l ++ ++
CP001589_1 238 QLESFNADVAHELRTPLTNLMGQTQLGLS---------RKRETHEL- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le+ l+e+er+ +++nd+L ls ++ag
CP001589_1 275 ----------EDLLESNLEELERMTSIVNDMLFLSHAQAG 304

CP001589_2388: domain 1 of 1, from 249 to 317: score 68.8, E = 3.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHEL+TPL+++r +elL +e+ ++l+ +q
CP001589_2 249 QRHEFLRHISHELKTPLASMREGTELLADEVA------GPLTQDQ-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++++++++l++Li++lLd+ r a
CP001589_2 288 ----------QEVVAILDHSSRHLQQLIEQLLDYNRKLAD 317

CP001589_2620: domain 1 of 1, from 284 to 354: score 67.1, E = 1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ +sHEL+TPLt I +yae+L+e l+ ++ ++
CP001589_2 284 QQVSFVGQVSHELKTPLTNITLYAEMLQE-----LQPEQSVPPTAE- 324

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle+il+e++rl+rLi+++L ++++
CP001589_2 325 ----------QRYLEVILNESQRLSRLIQNILSFTKAPKL 354

CP001589_2442: domain 1 of 1, from 237 to 301: score 67.0, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e+L+++l ++e
CP001589_2 237 MRRDFMADVSHELRTPLAVLRGELEALQDGL-------RQPTPES-- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++++ e+ l +L+ndl +ls+ + g
CP001589_2 275 -------------LSSLQAEVAILTKLVNDLHQLSQSDRG 301

CP001589_1853: domain 1 of 1, from 692 to 756: score 65.8, E = 2.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fla++sHELRTP+ aI+g++el + ++++ e+
CP001589_1 692 TKSTFLATISHELRTPMYAIMGLLELEIR---------SNRPVEK-- 727

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l t+ ++a++l L++d+ d ++ieag
CP001589_1 728 -----------DTLVTVSKSAQSLMLLLDDIIDSAKIEAG 756

CP001589_0069: domain 1 of 1, from 238 to 300: score 63.6, E = 9.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++++++sHELRTPLt +++++ l+++ + ++
CP001589_0 238 AQQRLISDISHELRTPLTRLQLATALMRR---------RHGEGKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL lsr ++
CP001589_0 274 -------------LERIEMEAQRLDSMINDLLVLSRSQHK 300

CP001589_0024: domain 1 of 1, from 129 to 194: score 62.4, E = 2.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP001589_0 129 AARDLVRGLAHEIKNPLGGLRGAAQLLAK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i+++a+rl++L+++lL r ++
CP001589_0 165 ----------LEYTQVIIEQADRLRNLVDRLLGPQRPGQH 194

CP001589_2342: domain 1 of 1, from 557 to 624: score 61.1, E = 5.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l ++ ++ +
CP001589_2 557 LRNSLLAALSHDLRTPLTVLFGQAEILTLDL-------AAEGSRH-- 594

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++++ + rL+n+lLd++ri++g
CP001589_2 595 ----------APQANQIRQQVLSTTRLVNNLLDMARIQSG 624

CP001589_2611: domain 1 of 1, from 228 to 291: score 53.9, E = 5.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l ++sHELR PL+ +++++ l ++++++ +
CP001589_2 228 AREQLLHDVSHELRSPLARLQLAIGL------------AHQNPDNV- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++i++e+erl+++i +lL lsr+e+
CP001589_2 262 ----------DNALQRIEHESERLDKMIGELLALSRAENH 291

CP001589_0124: domain 1 of 1, from 233 to 293: score 53.2, E = 8.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
CP001589_0 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSE--------------DD-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e+i +++e ++++i+++ d+ r +++
CP001589_0 264 ----------AYLSESINKDIEECNAIIEQFIDYLRTGQE 293

CP001589_3074: domain 1 of 1, from 136 to 196: score 46.9, E = 5.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELRTPL++Ir+++el+++ + e +
CP001589_3 136 QERLFTADAAHELRTPLAGIRLHLELMEK---------QGIAESK-- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++ l + i++lL lsr++++
CP001589_3 172 ---------------SLINRIDLLMHTIEQLLMLSRAGQN 196

CP001589_3478: domain 1 of 1, from 497 to 559: score 40.4, E = 3.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g +el + + s+ +r
CP001589_3 497 AVGQLTGGLAHDFNNLLAVIIGSLELTAT----------DSSDATR- 532

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++l++aer +L ++lL +sr ++
CP001589_3 533 -------------IHRALKAAERGAQLTQRLLAFSRKQSL 559

CP001589_1411: domain 1 of 1, from 195 to 255: score 36.2, E = 5.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k ++ +++HELRTPL +r + + + l+e ++
CP001589_1 195 SKKLLIDGIAHELRTPLVRLRYRLAMSDN-----------LTESEQ- 229

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++ +l++Li++lL+++r++ +
CP001589_1 230 --------------QALHHDIGQLEALIDELLTYARLDRP 255

CP001589_0780: domain 1 of 1, from 273 to 320: score 28.7, E = 7.9e-08
*->aIrgyaelLleeldkvlagdtelseeqrlpeLRledpeyreyletil
aI+g+aelL+e ++ +e +++l i+
CP001589_0 273 AISGAAELLRE---------SPPPETA------------QRFLINIE 298

reaerllrLindlLdlsrieag<-*
+++ r+++L++ +L +r+e+
CP001589_0 299 QQSARIQQLVDKMLVQARLESR 320


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 1 0|=
-13 13 2|*=
-12 125 82|======*====
-11 279 429|======================== *
-10 619 796|==================================================== *
-9 677 822|========================================================= *
-8 688 615|===================================================*======
-7 499 387|================================*=========
-6 295 223|==================*======
-5 185 122|==========*=====
-4 102 65|=====*===
-3 50 34|==*==
-2 24 18|=*
-1 23 9|*=
0 5 4|*
1 5 2|*
2 3 1|*
3 1 0|=
4 3 0|=
5 0 0|
6 1 0|=
> 7 22 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 282.6628
P(chi-square) = 0

Total sequences searched: 3630

Whole sequence top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: