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Classification of phyla is from NCBI page
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264 projects found  

4 accessions found for Yersinia pestis Z176003  

Data for CP001593  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001593.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001593_2160 CDS_2780484-2781194 55.2 4.9e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001593_2160 1/1 36 101 .. 1 70 [] 55.2 4.9e-16

Alignments of top-scoring domains:
CP001593_2160: domain 1 of 1, from 36 to 101: score 55.2, E = 4.9e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ ARELHD+vgQ+ ++i+ q++ ++rl+ + ++ + +++i
CP001593_2 36 TRHDVARELHDEVGQTVTVIRTQASIIKRLT--TQQ--PVLTSAEMI 78

relarealaevRrllgdLRpaal<-*
+++a + ++ v ++l L paal
CP001593_2 79 ETAALRVYDGVHDVLAKLWPAAL 101


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 1 0|=
-13 51 0|====
-12 101 39|==*=====
-11 257 324|==================== *
-10 507 753|======================================= *
-9 734 855|========================================================= *
-8 548 659|=========================================== *
-7 483 414|===============================*======
-6 338 234|=================*========
-5 235 125|=========*=========
-4 116 65|====*====
-3 67 33|==*===
-2 43 17|=*==
-1 25 8|*=
0 17 4|*=
1 13 2|*
2 2 1|*
3 0 0|
4 2 0|=
> 5 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 517.2239
P(chi-square) = 0

Total sequences searched: 3542

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: