Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Edwardsiella ictaluri 93-146  

Data for CP001600  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001600.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001600_1131 CDS_1178135-1179046 89.2 5.8e-25 1
CP001600_2918 CDS_2915575-2918331 88.3 1e-24 1
CP001600_2535 CDS_2521460-2518506 87.1 2.3e-24 1
CP001600_0916 CDS_952375-955110 86.2 4.1e-24 1
CP001600_0283 CDS_307110-309875 84.8 1e-23 1
CP001600_2115 CDS_2122855-2124627 75.1 5.6e-21 1
CP001600_0574 CDS_596044-598380 74.7 7.2e-21 1
CP001600_3598 CDS_3620800-3619334 71.4 6.5e-20 1
CP001600_0840 CDS_884715-886130 70.7 1e-19 1
CP001600_3721 CDS_3743389-3744456 65.8 2.5e-18 1
CP001600_1114 CDS_1160452-1159079 64.4 6e-18 1
CP001600_2035 CDS_2042995-2044470 62.1 2.8e-17 1
CP001600_3674 CDS_3692929-3694317 60.7 6.9e-17 1
CP001600_2790 CDS_2780658-2783366 56.8 8.7e-16 1
CP001600_0486 CDS_509134-507770 55.1 2.6e-15 1
CP001600_3510 CDS_3531660-3530275 52.3 1.7e-14 1
CP001600_0429 CDS_454281-453208 49.3 1.2e-13 1
CP001600_1864 CDS_1881251-1879941 40.8 3.1e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001600_1131 1/1 203 269 .. 1 87 [] 89.2 5.8e-25
CP001600_2918 1/1 287 352 .. 1 87 [] 88.3 1e-24
CP001600_2535 1/1 500 565 .. 1 87 [] 87.1 2.3e-24
CP001600_0916 1/1 388 453 .. 1 87 [] 86.2 4.1e-24
CP001600_0283 1/1 435 500 .. 1 87 [] 84.8 1e-23
CP001600_2115 1/1 370 435 .. 1 87 [] 75.1 5.6e-21
CP001600_0574 1/1 282 347 .. 1 87 [] 74.7 7.2e-21
CP001600_3598 1/1 267 335 .. 1 87 [] 71.4 6.5e-20
CP001600_0840 1/1 248 316 .. 1 87 [] 70.7 1e-19
CP001600_3721 1/1 135 200 .. 1 87 [] 65.8 2.5e-18
CP001600_1114 1/1 234 298 .. 1 87 [] 64.4 6e-18
CP001600_2035 1/1 255 321 .. 1 87 [] 62.1 2.8e-17
CP001600_3674 1/1 238 300 .. 1 87 [] 60.7 6.9e-17
CP001600_2790 1/1 665 732 .. 1 87 [] 56.8 8.7e-16
CP001600_0486 1/1 241 307 .. 1 87 [] 55.1 2.6e-15
CP001600_3510 1/1 233 293 .. 1 87 [] 52.3 1.7e-14
CP001600_0429 1/1 136 196 .. 1 87 [] 49.3 1.2e-13
CP001600_1864 1/1 211 271 .. 1 87 [] 40.8 3.1e-11

Alignments of top-scoring domains:
CP001600_1131: domain 1 of 1, from 203 to 269: score 89.2, E = 5.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e+ + ++++++qr
CP001600_1 203 ARRNFFANVSHELRTPLTVLQGYLEMFGD---------DAMPAPQR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l t++ +a+r++ L+++lL lsriea
CP001600_1 240 ----------EKALLTMQAQAQRMDGLVRQLLVLSRIEAA 269

CP001600_2918: domain 1 of 1, from 287 to 352: score 88.3, E = 1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ + t+ls+ q+
CP001600_2 287 IKSEFLANMSHELRTPLNGVIGFTRQVMK---------TPLSATQI- 323

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+r+a+ ll +ind+Ld+s++eag
CP001600_2 324 -----------DYLHTIERSANNLLTIINDVLDFSKLEAG 352

CP001600_2535: domain 1 of 1, from 500 to 565: score 87.1, E = 2.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ +l+ee
CP001600_2 500 SKSMFLATVSHELRTPLYGIIGNLDLLRT---------KTLPEEV-- 535

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + +++ ll++ind+Ld+s+ie++
CP001600_2 536 ----------QRLLGAMSNSSGLLLKIINDILDFSKIESE 565

CP001600_0916: domain 1 of 1, from 388 to 453: score 86.2, E = 4.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kse l ++sHE+RTPL++I+g++ lL++ +e + eq
CP001600_0 388 NKSEHLNSISHEIRTPLNGIIGALMLLEN---------GESTQEQ-- 423

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t l+++++ll++in+lLd+srie+g
CP001600_0 424 ----------HDLLDTGLKCSRHLLEIINNLLDFSRIESG 453

CP001600_0283: domain 1 of 1, from 435 to 500: score 84.8, E = 1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL++I+g+a+lL + ls+
CP001600_0 435 AKSAFLAAMSHEIRTPLHGILGTAQLLAG---------QQLSPRC-- 470

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ i +++e+ll+ +nd+Ld+s ieag
CP001600_0 471 ----------RDYVQAINDSGESLLAVLNDVLDYSAIEAG 500

CP001600_2115: domain 1 of 1, from 370 to 435: score 75.1, E = 5.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a+++HE R+PLtaIrgy+++++ +++ + +
CP001600_2 370 TLGELMAGVAHEVRNPLTAIRGYVQIIRQ---------QTALPAH-- 405

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl+++l+e++++++ i++lLd+sr ++
CP001600_2 406 ----------QEYLSVVLKEIDSINKVIQQLLDFSRPRQS 435

CP001600_0574: domain 1 of 1, from 282 to 347: score 74.7, E = 7.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ tel+eeq
CP001600_0 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TELNEEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+ +a l ++ nd+ ++ ++e
CP001600_0 318 ----------LKYLKTIHVSAIALGNIFNDIIEMDKLERR 347

CP001600_3598: domain 1 of 1, from 267 to 335: score 71.4, E = 6.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+ ++sH+LRTPLt++ gy+e+L ++++ls+ +r
CP001600_3 267 QRREFITTVSHDLRTPLTSLHGYLETLSL-------KRDTLSAADR- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+t+l +++ +L ++l +l+r+e g
CP001600_3 306 ----------RRYLDTALAQSQKVGHLAQQLFELARLEYG 335

CP001600_0840: domain 1 of 1, from 248 to 316: score 70.7, E = 1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl++lsHEL+TPL+++r +elL +++ ++ls++q
CP001600_0 248 QRHEFLRHLSHELKTPLASLREGTELLADGVA------GPLSPDQ-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + +++++++rl+ Li++lLd+ r a
CP001600_0 287 ----------REVVAILDDSSRRLQVLIEQLLDYNRRLAD 316

CP001600_3721: domain 1 of 1, from 135 to 200: score 65.8, E = 2.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP001600_3 135 AARDLVRGLAHEIKNPLGGLRGAAQLLAR----------ALPDPAL- 170

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i+++a+rl++L+++lL r ++
CP001600_3 171 ----------TEYTQVIIEQADRLRNLVDRLLGPQRPGQR 200

CP001600_1114: domain 1 of 1, from 234 to 298: score 64.4, E = 6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sHELRTPL+++rg +e+L++++ l+++
CP001600_1 234 IRRALMADVSHELRTPLAVLRGELEALQDGV-------RRLTPDS-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +++ e+ l +L+ndl +ls +ag
CP001600_1 272 -------------LTSLQAEVSTLTKLVNDLHQLSLSDAG 298

CP001600_2035: domain 1 of 1, from 255 to 321: score 62.1, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f a+++HE+RTP+t +++ +e+ l ++++e ++
CP001600_2 255 RQANFSADIAHEMRTPITNLITQSEIVLS---------QARTENEL- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + + l+e +r+ +++nd+L l++++++
CP001600_2 292 ----------KEVIYSNLEEYQRMAKMVNDMLFLAQADSQ 321

CP001600_3674: domain 1 of 1, from 238 to 300: score 60.7, E = 6.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++++++sHELRTPLt +++++ l+++ + +
CP001600_3 238 AQQRLISDISHELRTPLTRLQLATALMRR---------RHGEYSE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i+ ea rl+++indlL lsr ++
CP001600_3 274 -------------LTRIETEALRLDSMINDLLALSRNQHK 300

CP001600_2790: domain 1 of 1, from 665 to 732: score 56.8, E = 8.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l a++ ++q
CP001600_2 665 LRNSLLAALSHDLRTPLTVLFGQAEILTLDL----ASERSVHAPQ-- 705

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e i++++ +rL+n+lLd++ri++g
CP001600_2 706 -------------AEEIRQQILNTSRLVNNLLDMARIQSG 732

CP001600_0486: domain 1 of 1, from 241 to 307: score 55.1, E = 2.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELRTPL+a+r ae+ + + + r
CP001600_0 241 RERRFTSDAAHELRTPLAALRVQAEVVQL---------AQDDIALR- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++ ++r rL+++lL+lsr+++
CP001600_0 278 ----------QRALGQLEQGIDRATRLVDQLLTLSRLDSL 307

CP001600_3510: domain 1 of 1, from 233 to 293: score 52.3, E = 1.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ ++
CP001600_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSP---------QD------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e+i +++e ++++i+++ d+ r +++
CP001600_3 264 ----------AYLAESINKDTEECNAIIEQFIDYLRTGQE 293

CP001600_0429: domain 1 of 1, from 136 to 196: score 49.3, E = 1.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELRTPL+++r+++el++ +
CP001600_0 136 QERLFTADAAHELRTPLAGVRLHLELMEQSG---------------- 166

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++l + +++lL lsr +++
CP001600_0 167 ----------VQEATMLVQRIDQLMHTVEQLLMLSRVGQN 196

CP001600_1864: domain 1 of 1, from 211 to 271: score 40.8, E = 3.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r + + ls+ ++
CP001600_1 211 SKKQLIDGIAHELRTPLVRLRYRLAMSDS-----------LSAGEQ- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
i r++ +l+ Li++lL+++r++ +
CP001600_1 246 --------------AAINRDIGQLEGLIDELLTYARLDRP 271


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 5 0|=
-14 69 0|=======
-13 168 2|*===============
-12 242 86|=======*==============
-11 390 448|==================================== *
-10 585 832|====================================================== *
-9 617 859|========================================================= *
-8 642 643|==========================================================*
-7 407 405|====================================*
-6 265 233|=====================*===
-5 164 128|===========*===
-4 82 68|======*=
-3 50 36|===*=
-2 30 18|=*=
-1 23 9|*==
0 6 5|*
1 9 2|*
2 6 1|*
3 2 0|=
> 4 22 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 475.1122
P(chi-square) = 0

Total sequences searched: 3784

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: