Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

2 accessions found for Corynebacterium aurimucosum ATCC 700975  

Data for CP001601  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001601.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001601_0673 CDS_737066-738718 71.2 4.7e-20 1
CP001601_0286 CDS_324342-325607 70.4 8.2e-20 1
CP001601_2184 CDS_2388537-2387086 70.4 8.4e-20 1
CP001601_0824 CDS_903496-905106 48.4 1.4e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001601_0673 1/1 250 317 .. 1 87 [] 71.2 4.7e-20
CP001601_0286 1/1 155 221 .. 1 87 [] 70.4 8.2e-20
CP001601_2184 1/1 261 325 .. 1 87 [] 70.4 8.4e-20
CP001601_0824 1/1 255 328 .. 1 87 [] 48.4 1.4e-13

Alignments of top-scoring domains:
CP001601_0673: domain 1 of 1, from 250 to 317: score 71.2, E = 4.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++a+++ e++ +e ++ +
CP001601_0 250 LQRQFTSDVSHELRTPLTTVRMAADVIAEDA-------EEFNPYT-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e +++e++r ++L+ dlL++sr +ag
CP001601_0 288 ----------KRSAELLIKELDRFEDLLADLLEISRHDAG 317

CP001601_0286: domain 1 of 1, from 155 to 221: score 70.4, E = 8.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+an+sHEL+TP+ +I ++ae+Lle ++ ++e++
CP001601_0 155 ARRDFVANVSHELKTPVGGIALLAEALLE---------DTGDPEHV- 191

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++++ea r+ +++++l ls+++
CP001601_0 192 ----------EYFGSRVQKEAARMAEMVSELISLSKLQGA 221

CP001601_2184: domain 1 of 1, from 261 to 325: score 70.4, E = 8.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sHELRTPLt++rgy+el + ++ +
CP001601_2 261 QMRRFVGDASHELRTPLTSLRGYTELYRS----------GATKDP-- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i+ e++r++ +++dlL l+r+e
CP001601_2 296 ----------EFVFSKIDAESQRMSLMVEDLLALTRAEGS 325

CP001601_0824: domain 1 of 1, from 255 to 328: score 48.4, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkv..lagdtelseeq
++s+f+a++ HEL+TPLt++r+++elL + +++++g see+
CP001601_0 255 QQSQFVADAGHELKTPLTSMRTTIELLMM----LnkSGGGFGISEED 297

rlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r r++ e + + l+ Li dl dl+r +a
CP001601_0 298 R-----------RDLEEDVMAQMSELSTLIGDLVDLAREDAT 328


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 8 0|=
-13 30 1|*===
-12 116 57|======*======
-11 239 300|=========================== *
-10 479 556|====================================================== *
-9 493 574|======================================================= *
-8 446 430|===============================================*==
-7 296 271|==============================*==
-6 196 156|=================*====
-5 103 85|=========*==
-4 44 45|====*
-3 27 24|==*
-2 20 12|=*=
-1 9 6|*
0 7 3|*
1 7 1|*
2 1 0|=
3 4 0|=
> 4 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 115.3295
P(chi-square) = 1.572e-19

Total sequences searched: 2531

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: