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2 accessions found for Corynebacterium aurimucosum ATCC 700975  

Data for CP001601  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001601.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001601_1828 CDS_2039887-2038841 76.2 2.2e-22 1
CP001601_1311 CDS_1460348-1461463 74.7 6e-22 1
CP001601_2409 CDS_2652691-2651432 68.9 3.3e-20 1
CP001601_0469 CDS_505524-504394 65.8 2.6e-19 1
CP001601_2446 CDS_2692789-2693955 61.8 3.9e-18 1
CP001601_2245 CDS_2451332-2452036 56.4 1.6e-16 1
CP001601_0027 CDS_29379-28303 37.5 5.6e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001601_1828 1/1 151 218 .. 1 70 [] 76.2 2.2e-22
CP001601_1311 1/1 176 244 .. 1 70 [] 74.7 6e-22
CP001601_2409 1/1 212 280 .. 1 70 [] 68.9 3.3e-20
CP001601_0469 1/1 173 237 .. 1 70 [] 65.8 2.6e-19
CP001601_2446 1/1 186 252 .. 1 70 [] 61.8 3.9e-18
CP001601_2245 1/1 40 104 .. 1 70 [] 56.4 1.6e-16
CP001601_0027 1/1 166 224 .. 9 70 .] 37.5 5.6e-11

Alignments of top-scoring domains:
CP001601_1828: domain 1 of 1, from 151 to 218: score 76.2, E = 2.2e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIAR++HDs++++Ls+i++ ++++ ++ d+dpe+++ea+d+i
CP001601_1 151 ERNRIARDIHDSLSHRLSLISVYAGGLSYRK--DADPERVAEAADTI 195

relarealaevRrllgdLRpaal<-*
+ a+ a +++R ++ +LR ++
CP001601_1 196 QSEAKAAVEDLRGVIKALRVDDR 218

CP001601_1311: domain 1 of 1, from 176 to 244: score 74.7, E = 6e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ IA ++HD +g++L++i+l++e+arrl+ d+dp a+++l+ei
CP001601_1 176 QREDIAADIHDLLGHTLTVINLKSEVARRLI--DRDPSTAATELAEI 220

relarealaevRrllgdLR.paal<-*
l+r +laevR +++++++p+
CP001601_1 221 GVLSRMSLAEVRSTVTRMKnPTFA 244

CP001601_2409: domain 1 of 1, from 212 to 280: score 68.9, E = 3.3e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIA E+HD+++Q+Ls+i + l++a r ld ++d ++a+e+++ +
CP001601_2 212 ERQRIAHEIHDTLAQGLSSIQMLLHAADRDLD-QEDIPKAQERIELA 257

relarealaevRrllgdLRpaal<-*
r++a + l e+R+++ +L+paal
CP001601_2 258 RRTAADNLHEARAMIAALQPAAL 280

CP001601_0469: domain 1 of 1, from 173 to 237: score 65.8, E = 2.6e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RI RELHD+ Q L+a+kl l +a+ +p++a++al+ +
CP001601_0 173 ERRRIERELHDGPQQYLTALKLNLAAAK-----LQAPPQAQQALTDA 214

relarealaevRrllgdLRpaal<-*
++ a+ ala +R++++++ p++l
CP001601_0 215 EHNASLALASLRATVRGIAPQVL 237

CP001601_2446: domain 1 of 1, from 186 to 252: score 61.8, E = 3.9e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R++RE+HD+v+Q+Ls+i l + +a+ + + e+l+ i
CP001601_2 186 ERERLSREIHDTVAQGLSSIVLLSRAAKNTS--TQQ--DVTEQLALI 228

relarealaevRrllgdLR.paal<-*
++ a++ lae+Rr + +L pa
CP001601_2 229 EKVAQDNLAEARRFVKELAaPASS 252

CP001601_2245: domain 1 of 1, from 40 to 104: score 56.4, E = 1.6e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERaRI R+LHD+ Q L a++++l+ a+ ++p e++e l+++
CP001601_2 40 ERARIERDLHDGAQQYLVAASMKLGEAL-----LDAPSEIAELLTAA 81

relarealaevRrllgdLRpaal<-*
++ ++++l +R+++++++p++l
CP001601_2 82 KQDVDRGLHSLRATVHGIHPQVL 104

CP001601_0027: domain 1 of 1, from 166 to 224: score 37.5, E = 5.6e-11
*->LHDsvgQsLsaiklqlelarrlldsdkdpeearealdeirelareal
LHDsv+ +L+++ + +e+++ l+ ++dp a++ +++i++ ar+a+
CP001601_0 166 LHDSVAATLTSVVMRSETLA-LT--QSDP-SAADSAEAIADDARRAM 208

aevRrllgdLR.paal<-*
evR+ll++++++++
CP001601_0 209 GEVRDLLRVMKnESVT 224


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 7 0|=
-13 33 0|=====
-12 77 28|===*======
-11 117 231|=============== *
-10 338 538|=========================================== *
-9 440 611|======================================================= *
-8 374 471|=============================================== *
-7 354 296|====================================*========
-6 270 167|====================*=============
-5 227 89|===========*=================
-4 98 46|=====*=======
-3 72 24|==*======
-2 55 12|=*=====
-1 23 6|*==
0 24 3|*==
1 5 1|*
2 5 0|=
3 0 0|
4 2 0|=
5 1 0|=
> 6 9 -|==


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 908.9326
P(chi-square) = 0

Total sequences searched: 2531

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: