Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Bifidobacterium animalis subsp. lactis DSM 10140  

Data for CP001606  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001606.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001606_0968 CDS_1154475-1152997 121.5 8.6e-35 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001606_0968 1/1 292 375 .. 1 94 [] 121.5 8.6e-35

Alignments of top-scoring domains:
CP001606_0968: domain 1 of 1, from 292 to 375: score 121.5, E = 8.6e-35
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ +S+LLrLQark+k++ev ++ L+E+ +RV++
CP001606_0 292 EIHHRVKNNLQAVSALLRLQARKTKSQEV-----KKELQEAMRRVQT 333

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A++HE L+++ d ++vdf+ ++++L++ ++++ ++++i +
CP001606_0 334 IAMVHEGLSQTAD-ENVDFDKVISNLLRMSVDLASMRDQHIT----I 375


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 6 0|=
-13 28 9|=*==
-12 98 102|==============*
-11 327 286|========================================*======
-10 374 370|====================================================*=
-9 272 313|======================================= *
-8 217 210|=============================*=
-7 86 124|============= *
-6 92 69|=========*====
-5 28 37|==== *
-4 14 19|==*
-3 8 10|=*
-2 6 5|*
-1 5 2|*
> 0 4 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 69.4140
P(chi-square) = 1.579e-10

Total sequences searched: 1566

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: