Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for CP001607  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001607.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001607_1174 CDS_1275932-1274082 74.2 6.2e-21 1
CP001607_1676 CDS_1783954-1785342 58.8 1.4e-16 1
CP001607_0417 CDS_461298-462665 54.0 3.1e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001607_1174 1/1 121 186 .. 1 87 [] 74.2 6.2e-21
CP001607_1676 1/1 240 302 .. 1 87 [] 58.8 1.4e-16
CP001607_0417 1/1 237 303 .. 1 87 [] 54.0 3.1e-15

Alignments of top-scoring domains:
CP001607_1174: domain 1 of 1, from 121 to 186: score 74.2, E = 6.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ ++ ++sHELRTPL++I+g++ +Lle + +e q
CP001607_1 121 DKTTLMTTISHELRTPLNGIIGLSRILLE---------EQPTERQ-- 156

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl+ti ++a +l+++ +d+ dl++i+a
CP001607_1 157 ----------RNYLKTINSSAVSLSHIFSDIIDLEKIDAR 186

CP001607_1676: domain 1 of 1, from 240 to 302: score 58.8, E = 1.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sHELRTPLt +++++ lL++ ++ +
CP001607_1 240 NQQSLLSSISHELRTPLTRLQLATALLRR---------KLGDSSE-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i+ ea+rl+++indlL+lsr +
CP001607_1 276 -------------IQRIDTEAQRLDKMINDLLQLSRQQLH 302

CP001607_0417: domain 1 of 1, from 237 to 303: score 54.0, E = 3.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a+r +e+++ + ++ r
CP001607_0 237 RERRFTSDAAHELRSPLAALRIQTEVAQI---------AGDDSVLR- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ + + ++r +L+++lL+lsr+++
CP001607_0 274 ----------EQALDNLTKGIDRATQLVEQLLTLSRLDNL 303


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 32 0|====
-13 62 1|*=======
-12 130 50|======*==========
-11 218 264|============================ *
-10 372 490|=============================================== *
-9 426 506|====================================================== *
-8 372 379|===============================================*
-7 253 239|=============================*==
-6 151 137|=================*=
-5 92 75|=========*==
-4 48 40|====*=
-3 36 21|==*==
-2 17 11|=*=
-1 8 5|*
0 4 3|*
1 4 1|*
2 1 0|=
3 1 0|=
> 4 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 193.2974
P(chi-square) = 1.824e-35

Total sequences searched: 2231

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: