Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for CP001607  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001607.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001607_1886 CDS_1997122-1998828 65.4 3e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001607_1886 1/1 365 437 .. 1 70 [] 65.4 3e-19

Alignments of top-scoring domains:
CP001607_1886: domain 1 of 1, from 365 to 437: score 65.4, E = 3e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe....earea
ER IARELHDs++Q L+ + +ql l+++ l kd ++++++
CP001607_1 365 ERSIIARELHDSLAQVLAFLQIQLTLLKHNL--NKDEPdsknKSLSI 409

ldeirelarealaevRrllgdLR.paal<-*
+++ +++++++++++R+ll ++R + ++
CP001607_1 410 IRQFERALSDGYSQLRELLATFRlTIQE 437


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 2 0|=
-14 41 0|======
-13 105 0|==============
-12 117 24|==*============
-11 176 204|====================== *
-10 442 474|======================================================== *
-9 434 538|======================================================= *
-8 293 415|===================================== *
-7 228 261|============================= *
-6 155 147|==================*=
-5 99 79|=========*===
-4 59 41|=====*==
-3 31 21|==*=
-2 23 10|=*=
-1 11 5|*=
0 5 2|*
1 6 1|*
> 2 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 443.1342
P(chi-square) = 0

Total sequences searched: 2231

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: