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Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Tolumonas auensis DSM 9187  

Data for CP001616  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001616.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001616_2710 CDS_3014172-3016898 94.0 2.1e-26 1
CP001616_1373 CDS_1535446-1537473 91.0 1.4e-25 1
CP001616_2036 CDS_2258760-2257462 86.3 3.1e-24 1
CP001616_1609 CDS_1800393-1803788 84.5 9.9e-24 1
CP001616_1262 CDS_1399522-1402059 77.3 1.1e-21 1
CP001616_0616 CDS_694599-696947 76.1 2.4e-21 1
CP001616_0456 CDS_513828-512776 68.1 4.6e-19 1
CP001616_0868 CDS_952067-950703 62.6 1.7e-17 1
CP001616_1889 CDS_2096571-2095495 57.2 5.6e-16 1
CP001616_0055 CDS_69362-71980 55.9 1.3e-15 2
CP001616_1185 CDS_1306212-1308905 50.2 5.2e-14 1
CP001616_2976 CDS_3306876-3305458 48.9 1.2e-13 1
CP001616_0020 CDS_24437-23028 28.4 7.8e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001616_2710 1/1 290 355 .. 1 87 [] 94.0 2.1e-26
CP001616_1373 1/1 171 236 .. 1 87 [] 91.0 1.4e-25
CP001616_2036 1/1 205 271 .. 1 87 [] 86.3 3.1e-24
CP001616_1609 1/1 675 741 .. 1 87 [] 84.5 9.9e-24
CP001616_1262 1/1 475 543 .. 1 87 [] 77.3 1.1e-21
CP001616_0616 1/1 282 347 .. 1 87 [] 76.1 2.4e-21
CP001616_0456 1/1 131 196 .. 1 87 [] 68.1 4.6e-19
CP001616_0868 1/1 231 294 .. 1 87 [] 62.6 1.7e-17
CP001616_1889 1/1 140 200 .. 1 87 [] 57.2 5.6e-16
CP001616_1185 1/1 663 730 .. 1 87 [] 50.2 5.2e-14
CP001616_2976 1/1 268 326 .. 1 87 [] 48.9 1.2e-13
CP001616_0055 2/2 506 573 .. 1 87 [] 47.8 2.5e-13
CP001616_0020 1/1 262 317 .. 1 66 [. 28.4 7.8e-08

Alignments of top-scoring domains:
CP001616_2710: domain 1 of 1, from 290 to 355: score 94.0, E = 2.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ L + t ls q
CP001616_2 290 IKSEFLANMSHELRTPLNGVIGFTRQLFK---------TQLSLHQ-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ti+++a+ ll++ind+Ld+s++eag
CP001616_2 326 ----------RDYLSTIEHSAKNLLSIINDILDFSKLEAG 355

CP001616_1373: domain 1 of 1, from 171 to 236: score 91.0, E = 1.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL+a++ ++elLle t l++ q
CP001616_1 171 AKSHFLATMSHEIRTPLNAVINLSELLLE---------TQLDDRQ-- 206

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++ + + +++ll+L+nd+Ld+srieag
CP001616_1 207 ----------RKLTQGVCEGGRSLLQLVNDVLDFSRIEAG 236

CP001616_2036: domain 1 of 1, from 205 to 271: score 86.3, E = 3.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+an+sHELRTPLt+++gy+e+L++ el+++ r
CP001616_2 205 MRKNFVANVSHELRTPLTVLKGYLEMLED----------ELPPPAR- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +++l+++ r+++L+++lL+lsrie
CP001616_2 241 ---------WKKMQQVMLEQTMRMDSLVDQLLTLSRIEVA 271

CP001616_1609: domain 1 of 1, from 675 to 741: score 84.5, E = 9.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ la+lsHELRTPL++++gya+lL + d +l+ ++
CP001616_1 675 AKSRYLAGLSHELRTPLNVLLGYAQLLSD--------DRKLDHQT-- 711

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey ++++r +++l++L++ lL++s+ieag
CP001616_1 712 ----------REYAHILRRNGKHLSDLLEGLLEISKIEAG 741

CP001616_1262: domain 1 of 1, from 475 to 543: score 77.3, E = 1.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ fl+++sHELRTPL+aI+g+ +lL++ d +ls +r
CP001616_1 475 TKGLFLSSMSHELRTPLNAILGFGQLLQK-------DDNKLSVRDR- 513

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ i ++ +ll+Li+d+L ls ie+
CP001616_1 514 ----------KDYIDEIMTAGTHLLNLIDDVLNLSHIESK 543

CP001616_0616: domain 1 of 1, from 282 to 347: score 76.1, E = 2.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL+++ g++++Ll+ t+l++ q
CP001616_0 282 DKTTFISTISHELRTPLNGVVGLSHILLD---------TPLNDLQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ti+ +a l ++ nd+ dl +ie
CP001616_0 318 ----------RQYLNTIHLSAVTLGNIFNDIIDLDKIERR 347

CP001616_0456: domain 1 of 1, from 131 to 196: score 68.1, E = 4.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL++ +l++eq+
CP001616_0 131 AARDLVRGLAHEIKNPLGGLRGAAQLLEK----------ALPDEQL- 166

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+ +i+ +a+rl++L+++lL r +
CP001616_0 167 ----------KEYTGIIIAQADRLRNLVDRLLGPQRPGRH 196

CP001616_0868: domain 1 of 1, from 231 to 294: score 62.6, E = 1.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l ++sH+LR PL+ +++++ lL+ ++e +
CP001616_0 231 VQRRLLHDVSHDLRSPLARLQLAIGLLRQ-----------KPENT-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i++e +rl++L+ ++L l+r+e+g
CP001616_0 265 ----------EQMLQRIEQECHRLNNLVGEVLMLARMESG 294

CP001616_1889: domain 1 of 1, from 140 to 200: score 57.2, E = 5.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f++++sHELRTP+++Ir+++elL+ +s+++
CP001616_1 140 RERQFTSDVSHELRTPIAGIRLNLELLEQ-----------QSPQE-- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ +++++r i++lL+++r+e+
CP001616_1 174 -------------IMPLIARLDSMQRTIDQLLTMARLEQK 200

CP001616_1185: domain 1 of 1, from 663 to 730: score 50.2, E = 5.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ + ae+L l e+s+
CP001616_1 663 LRNALLAALSHDLRTPLTVLFAQAEILMQSLA------LEQSPHI-- 701

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i+ ++ rL+n+lLd++r+e++
CP001616_1 702 -----------QQANAIRTQVLGTTRLVNNLLDMARLESE 730

CP001616_2976: domain 1 of 1, from 268 to 326: score 48.9, E = 1.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sH+LRTPLt++r+ +e L e
CP001616_2 268 DRTQMLAAISHDLRTPLTSLRLRCEFLPE------------------ 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++l+ + ++++++ L ++r e+
CP001616_2 297 ----------GDDRDRMLQTLAQMENMLHATLSFARDEHH 326

CP001616_0055: domain 2 of 2, from 506 to 573: score 47.8, E = 2.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ L++I+g++elLl+ d+++ +e +
CP001616_0 506 AVGHLTGGIAHDFNNLLAVILGNLELLLT--------DDDALAERT- 543

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +e++++++er +L ++lL +sr +a
CP001616_0 544 ----------RQRIERAYKATERGAQLTQRLLAFSRKQAL 573

CP001616_0020: domain 1 of 1, from 262 to 317: score 28.4, E = 7.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
++++++++sH+L+TP+t +r+ +elL +++ + + + +l++ ++
CP001616_0 262 DREKLFSSISHDLKTPITRLRLRVELLDDDS--QiAKFSKDLDDLEM 306

lpeLRledpeyreyletilr<-*
+++ +l+t+++
CP001616_0 307 ---------MVKGALQTVKD 317


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 6 0|=
-13 33 2|*===
-12 135 71|=======*======
-11 302 371|=============================== *
-10 505 688|=================================================== *
-9 586 710|==========================================================*
-8 526 532|=====================================================*
-7 400 335|=================================*======
-6 276 193|===================*========
-5 141 105|==========*====
-4 80 56|=====*==
-3 49 29|==*==
-2 38 15|=*==
-1 13 8|*=
0 11 4|*=
1 4 2|*
2 7 1|*
3 1 0|=
> 4 17 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 255.9238
P(chi-square) = 0

Total sequences searched: 3130

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: