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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Beutenbergia cavernae DSM 12333  

Data for CP001618  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001618.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001618_0834 CDS_936009-934606 82.5 5e-23 1
CP001618_0852 CDS_955099-957195 82.0 6.9e-23 1
CP001618_0337 CDS_362850-364589 77.1 1.7e-21 1
CP001618_1235 CDS_1404458-1406221 73.8 1.5e-20 1
CP001618_0765 CDS_859996-861189 73.8 1.5e-20 1
CP001618_3755 CDS_4195741-4193168 72.1 4.4e-20 1
CP001618_1269 CDS_1449964-1448777 71.8 5.4e-20 1
CP001618_3065 CDS_3442372-3443550 63.1 1.6e-17 1
CP001618_3144 CDS_3520461-3522014 56.9 9.2e-16 1
CP001618_1150 CDS_1297946-1299271 52.3 1.8e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001618_0834 1/1 237 303 .. 1 87 [] 82.5 5e-23
CP001618_0852 1/1 457 525 .. 1 87 [] 82.0 6.9e-23
CP001618_0337 1/1 340 406 .. 1 87 [] 77.1 1.7e-21
CP001618_1235 1/1 316 383 .. 1 87 [] 73.8 1.5e-20
CP001618_0765 1/1 153 219 .. 1 87 [] 73.8 1.5e-20
CP001618_3755 1/1 640 708 .. 1 87 [] 72.1 4.4e-20
CP001618_1269 1/1 137 201 .. 1 87 [] 71.8 5.4e-20
CP001618_3065 1/1 157 221 .. 1 87 [] 63.1 1.6e-17
CP001618_3144 1/1 277 341 .. 1 87 [] 56.9 9.2e-16
CP001618_1150 1/1 207 272 .. 1 87 [] 52.3 1.8e-14

Alignments of top-scoring domains:
CP001618_0834: domain 1 of 1, from 237 to 303: score 82.5, E = 5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHELRTPL+a+rgyael + + +++++
CP001618_0 237 RMQRFVSDASHELRTPLAAMRGYAELYRL---------GGIPDDDV- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+++re+ r+ +L+ndlL l+r+++g
CP001618_0 274 ----------PQVMERLERESVRMGSLVNDLLALARLDEG 303

CP001618_0852: domain 1 of 1, from 457 to 525: score 82.0, E = 6.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef++ +sHELRTPLt+Irg + lL ++ ++ s++
CP001618_0 457 LKNEFVSVISHELRTPLTSIRGSLGLLAGGAA------GPISDQA-- 495

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++ ++l ++erl rLind+L+ +r+eag
CP001618_0 496 ----------RRMVTIALGSSERLTRLINDILEVERMEAG 525

CP001618_0337: domain 1 of 1, from 340 to 406: score 77.1, E = 1.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ +sHELRTPL++I+gy+elL+ + ++ls e+
CP001618_0 340 LQDEFIGLVSHELRTPLSSILGYVELLQLG--------GALSGED-- 376

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+++i+r a+rllr+++dlL+ ++ ag
CP001618_0 377 ----------ETYVDVIDRNARRLLRMVDDLLTSVQLTAG 406

CP001618_1235: domain 1 of 1, from 316 to 383: score 73.8, E = 1.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt+Ir++ae+L + +++e ++ +
CP001618_1 316 VQQRFVSDVSHELRTPLTTIRMAAEILFA-------ERHEFDPAT-- 353

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e ++ +++r ++L+ dlL++sr +ag
CP001618_1 354 ----------RRSAELLHAQLDRFEELLADLLEISRFDAG 383

CP001618_0765: domain 1 of 1, from 153 to 219: score 73.8, E = 1.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ aI ++ae++ + ++ +++ +
CP001618_0 153 VRRDFVANVSHELKTPVGAIALLAETIGD---------AAGDPDAV- 189

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ e + re++rl++L++d+ dlsr++++
CP001618_0 190 ----------RRFSEQMGRESRRLSELVQDIIDLSRLQEP 219

CP001618_3755: domain 1 of 1, from 640 to 708: score 72.1, E = 4.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPL++Ir++++ L+ ++ +l++++
CP001618_3 640 TRTALLAAVSHDLRTPLASIRAAVDGLRSDA-------VALDPDDE- 678

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++t+ ++ rl++Li++lLd sr+e+g
CP001618_3 679 ----------AALVDTAATSTARLEQLIDNLLDASRLESG 708

CP001618_1269: domain 1 of 1, from 137 to 201: score 71.8, E = 5.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e +an+sHELRTP++a+r+ +e + +++ t +ee
CP001618_1 137 ARREIVANVSHELRTPVAALRAQLENMVDGV-------TRPDEEA-- 174

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ +l+++erl rL+ lLdlsr+eag
CP001618_1 175 -------------LQAALDQTERLTRLVTYLLDLSRLEAG 201

CP001618_3065: domain 1 of 1, from 157 to 221: score 63.1, E = 1.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++ ++ +sH+LRTPL+++r++ae+L++ + +++
CP001618_3 157 ARRQVVSWVSHDLRTPLAGLRAMAEALED---------GIVDDPR-- 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y +i++++ +++L++dlL +s i+ag
CP001618_3 193 -----------PYYARIQQQVAAMSALVDDLLAFSTIQAG 221

CP001618_3144: domain 1 of 1, from 277 to 341: score 56.9, E = 9.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l ++ HELRTPLt++rg++el+ + +e+
CP001618_3 277 DQRQLLDDVGHELRTPLTVVRGHLELMDP----------ADPEDA-- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +e++r+ L++dl +l+r+e +
CP001618_3 312 ----------AQTRALAMDELDRMYGLVDDLVTLARAERP 341

CP001618_1150: domain 1 of 1, from 207 to 272: score 52.3, E = 1.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++sH+LRTPLta+++ +e +++ + +++
CP001618_1 207 AERQFAADASHQLRTPLTALSMRLEEIQA---------LTTDDDV-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ l+++erl + ++dlL+ sr g
CP001618_1 243 ----------REEARVSLEQIERLVAVVDDLLTNSRRAGG 272


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-14 3 0|=
-13 37 3|*==
-12 141 95|======*===
-11 355 497|======================== *
-10 684 922|============================================== *
-9 848 953|========================================================= *
-8 785 713|===============================================*=====
-7 572 449|=============================*=========
-6 325 258|=================*====
-5 206 141|=========*====
-4 99 75|====*==
-3 76 40|==*===
-2 26 21|=*
-1 13 11|*
0 5 5|*
1 7 2|*
2 1 1|*
3 2 0|=
> 4 12 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 262.2678
P(chi-square) = 0

Total sequences searched: 4197

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: