Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Beutenbergia cavernae DSM 12333  

Data for CP001618  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001618.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001618_2808 CDS_3159653-3158100 107.0 3e-30 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001618_2808 1/1 290 355 .. 1 72 [. 107.0 3e-30

Alignments of top-scoring domains:
CP001618_2808: domain 1 of 1, from 290 to 355: score 107.0, E = 3e-30
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar++++ ++ + aL+E+ +RV++
CP001618_2 290 EIHHRVKNNLQTVAALLRLQARRTTSDDA-----RLALEEAMRRVAT 331

mAliHEeLYksedldtvdfseYlek<-*
+A++HE L+++ d + vdf+e++ +
CP001618_2 332 IATVHEALSQTID-EVVDFDEVFGR 355


Histogram of all scores:
score obs exp (one = represents 24 sequences)
----- --- ---
-15 8 0|=
-14 6 0|=
-13 56 26|=*=
-12 225 275|========== *
-11 1364 767|===============================*=========================
-10 968 993|=========================================*
-9 597 838|========================= *
-8 471 562|==================== *
-7 218 334|========== *
-6 157 186|=======*
-5 49 100|=== *
-4 38 53|==*
-3 13 27|=*
-2 12 14|*
-1 6 7|*
0 2 3|*
1 5 2|*
2 0 1|*
3 0 0|
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 675.9918
P(chi-square) = 0

Total sequences searched: 4197

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: