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1 accessions found for Dyadobacter fermentans DSM 18053  

Data for CP001619  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001619.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001619_4431 CDS_5436683-5434752 55.8 5.1e-16 1
CP001619_2006 CDS_2507026-2505599 52.3 5.5e-15 1
CP001619_5460 CDS_6673755-6671842 49.9 2.9e-14 1
CP001619_1665 CDS_2064588-2066582 46.3 3.3e-13 1
CP001619_2904 CDS_3625334-3626197 39.4 3.7e-11 1
CP001619_0411 CDS_478604-476802 35.0 6.9e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001619_4431 1/1 446 512 .. 1 70 [] 55.8 5.1e-16
CP001619_2006 1/1 274 340 .. 1 70 [] 52.3 5.5e-15
CP001619_5460 1/1 432 498 .. 1 70 [] 49.9 2.9e-14
CP001619_1665 1/1 471 535 .. 1 70 [] 46.3 3.3e-13
CP001619_2904 1/1 65 133 .. 1 70 [] 39.4 3.7e-11
CP001619_0411 1/1 404 469 .. 1 70 [] 35.0 6.9e-10

Alignments of top-scoring domains:
CP001619_4431: domain 1 of 1, from 446 to 512: score 55.8, E = 5.1e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R AR+LHD++g Ls+ikl l ++ + pee + +++++
CP001619_4 446 ERTRVARDLHDGLGGLLSGIKLTLNSVKGNV---ILPEESAMTFTRA 489

relarealaevRrllgdLRpaal<-*
+ ++ a++e+Rr+++ + p l
CP001619_4 490 LTQLDGAISEMRRVAHSMMPESL 512

CP001619_2006: domain 1 of 1, from 274 to 340: score 52.3, E = 5.5e-15
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R A ELHD++gQ+L+++kl++e ++ ++ + ++e+ +++++++
CP001619_2 274 ERKRFALELHDGIGQMLTGLKLHAEKLK-AV--QFHDEKHQKRFEQL 317

relarealaevRrllgdLRpaal<-*
+l+++ ++ +R++ +L p++l
CP001619_2 318 VTLIQDIIQTTRQISFNLMPSVL 340

CP001619_5460: domain 1 of 1, from 432 to 498: score 49.9, E = 2.9e-14
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIA +LHD +g +L+ i++++++ar +l ++d + + ++ldei
CP001619_5 432 ERRRIAADLHDDLGGTLATIRIKVGRAR-RL--PRDTGDISRELDEI 475

relarealaevRrllgdLRpaal<-*
+ l+ ++ +++Rr+ ++L p+++
CP001619_5 476 EPLIMKTSEDLRRISHNLMPPEF 498

CP001619_1665: domain 1 of 1, from 471 to 535: score 46.3, E = 3.3e-13
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R+AR+LHD++g Ls+ik+ l++ + + ++d +++ +++
CP001619_1 471 ERTRLARDLHDGLGGLLSSIKIELSREL-SV--QDD--RLKNSVTRT 512

relarealaevRrllgdLRpaal<-*
++++a +e+Rr+++ L p +l
CP001619_1 513 LSHLDDAVNELRRIARSLMPEIL 535

CP001619_2904: domain 1 of 1, from 65 to 133: score 39.4, E = 3.7e-11
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+RIA++LHD +g +Ls+ kl l + +l+ ++ +++ + ++
CP001619_2 65 ERRRIAQDLHDDIGTMLSLTKLSLNQLSKLV--ASSGDeKEESIMKK 109

irelarealaevRrllgdLRpaal<-*
+ l++e++ vRr+ +dL p++l
CP001619_2 110 SQSLVEETILHVRRITRDLVPTTL 133

CP001619_0411: domain 1 of 1, from 404 to 469: score 35.0, E = 6.9e-10
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R A ELHD +g +L++++ l ++ + + ee ++ d +
CP001619_0 404 ERKRVAAELHDHLGGTLASLNWYLYGIDK----KVLSEEEQKIYDSV 446

relarealaevRrllgdLRpaal<-*
++++ a++evR l ++L pa+l
CP001619_0 447 HQMVGAAYKEVRSLSHNLMPAEL 469


Histogram of all scores:
score obs exp (one = represents 22 sequences)
----- --- ---
-15 1 0|=
-14 42 0|==
-13 138 0|=======
-12 228 63|==*========
-11 366 524|================= *
-10 1038 1216|================================================ *
-9 1296 1381|==========================================================*
-8 907 1064|========================================== *
-7 653 669|==============================*
-6 377 378|=================*
-5 338 203|=========*======
-4 135 106|====*==
-3 91 54|==*==
-2 47 27|=*=
-1 28 14|*=
0 12 7|*
1 6 3|*
2 3 1|*
3 3 0|=
> 4 10 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 675.9810
P(chi-square) = 0

Total sequences searched: 5719

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: