Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Corynebacterium kroppenstedtii DSM 44385  

Data for CP001620  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001620.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001620_0343 CDS_444593-446428 75.1 3.1e-21 1
CP001620_1434 CDS_1785734-1783287 66.8 6.9e-19 1
CP001620_1839 CDS_2236782-2235589 61.2 2.6e-17 1
CP001620_1855 CDS_2254672-2255799 44.4 1.5e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001620_0343 1/1 384 448 .. 1 87 [] 75.1 3.1e-21
CP001620_1434 1/1 327 394 .. 1 87 [] 66.8 6.9e-19
CP001620_1839 1/1 168 234 .. 1 87 [] 61.2 2.6e-17
CP001620_1855 1/1 143 207 .. 1 87 [] 44.4 1.5e-12

Alignments of top-scoring domains:
CP001620_0343: domain 1 of 1, from 384 to 448: score 75.1, E = 3.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ ++sHELRTPLt+++gyael ++ ++++
CP001620_0 384 TMRRFIGDASHELRTPLTSVSGYAELYRT----------GQTDDL-- 418

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i eaer++ L++dlLdl+r+++
CP001620_0 419 ----------NLVLDSISAEAERMSVLVQDLLDLARMDNS 448

CP001620_1434: domain 1 of 1, from 327 to 394: score 66.8, E = 6.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHELR PLt++r++a+++++++ ++l++
CP001620_1 327 LQKQFTSDVSHELRSPLTTVRMAADIIEDNA-------DNLDPVM-- 364

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ + + +e+ r + L++dlLd+sr ++g
CP001620_1 365 ----------RRASSLMNKELGRFEGLLSDLLDISRHDSG 394

CP001620_1839: domain 1 of 1, from 168 to 234: score 61.2, E = 2.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+an+sHEL+ P+ a+++++e+Lle ++ +++ +
CP001620_1 168 ARRDFVANVSHELKSPVGAVSLMVEALLE---------AKDDPDSV- 204

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ +e++rl +Li +l l++++
CP001620_1 205 ----------EYFGGKVMKETQRLGQLITELISLTKLQGA 234

CP001620_1855: domain 1 of 1, from 143 to 207: score 44.4, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l++l+HE+ TPL+++ y++ L++++ +++ +
CP001620_1 143 VRRQMLSDLAHEMGTPLSVLTVYLDGLQDGV-------VDWNNAT-- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ rl rL +d+ d sr+++
CP001620_1 181 -------------HTIMADQLTRLTRLMEDIDDVSRAQER 207


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 7 0|=
-13 28 1|*===
-12 94 46|======*=======
-11 202 239|============================= *
-10 349 443|================================================== *
-9 406 458|==========================================================*
-8 373 343|================================================*=====
-7 214 216|==============================*
-6 140 124|=================*==
-5 100 68|=========*=====
-4 51 36|=====*==
-3 22 19|==*=
-2 12 10|=*
-1 4 5|*
0 6 2|*
1 1 1|*
2 2 0|=
3 0 0|
4 1 0|=
> 5 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 107.4633
P(chi-square) = 1.731e-18

Total sequences searched: 2018

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: