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Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

6 accessions found for Rhizobium leguminosarum bv. trifolii WSM1325  

Data for CP001623  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001623.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001623_0445 CDS_503730-510029 78.6 1.1e-22 1
CP001623_0397 CDS_442648-444051 59.6 2.8e-17 1
CP001623_0522 CDS_600349-596714 35.8 1.5e-10 1
CP001623_0446 CDS_510040-511716 34.3 4.1e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001623_0445 1/1 1424 1492 .. 1 87 [] 78.6 1.1e-22
CP001623_0397 1/1 248 313 .. 1 87 [] 59.6 2.8e-17
CP001623_0522 1/1 988 1058 .. 1 87 [] 35.8 1.5e-10
CP001623_0446 1/1 189 255 .. 1 87 [] 34.3 4.1e-10

Alignments of top-scoring domains:
CP001623_0445: domain 1 of 1, from 1424 to 1492: score 78.6, E = 1.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+ + + L e d++ls +q
CP001623_0 1424 YKSEFLANMSHELRTPLNSILILGQQLGE------NPDGNLSGKQ-- 1462

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +ti+ ++ ll+Li+d+Ldls+ie+g
CP001623_0 1463 ----------VEFAKTIHGAGTDLLNLISDILDLSKIESG 1492

CP001623_0397: domain 1 of 1, from 248 to 313: score 59.6, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f++n++H+LRTPL+ I++ a+++ + e+++ r
CP001623_0 248 AQRRFVSNAAHQLRTPLALISTQASVAAR----------EADPARR- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ++ ++++++rL ++lL+lsr+e g
CP001623_0 284 ----------DEALVALRTSTKQISRLASQLLTLSRAEPG 313

CP001623_0522: domain 1 of 1, from 988 to 1058: score 35.8, E = 1.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ e+ a+++HE ++PL+a+ +++++++++l +e + +r+
CP001623_0 988 SLAELSASIAHEVNQPLAAVVANSHACQRWLM------AEPPNMERA 1028

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+i+r+a++ + +++++ l +
CP001623_0 1029 ----------QRTVERIIRDANSAADVVSRIRALFKQSVD 1058

CP001623_0446: domain 1 of 1, from 189 to 255: score 34.3, E = 4.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++H++++ L a++g + lL++ + +++e
CP001623_0 189 TIGHLTGGVAHDFNNLLMAVLGSLNLLKK--------RLPADERS-- 225

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++++aer +L ++lL ++r ++
CP001623_0 226 ----------ERLVTNAIQAAERGTALTQRLLAFARRQEL 255


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 1 0|=
-13 5 0|==
-12 22 16|=====*==
-11 48 87|================ *
-10 123 162|========================================= *
-9 162 167|====================================================== *
-8 149 125|=========================================*========
-7 100 78|=========================*========
-6 56 45|==============*====
-5 31 24|=======*===
-4 13 13|====*
-3 6 7|==*
-2 8 3|*==
-1 6 1|*=
> 0 7 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 43.0736
P(chi-square) = 2.09e-06

Total sequences searched: 737

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: