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Firmicutes Fusobacteria Gammaproteobacteria
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Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

6 accessions found for Rhizobium leguminosarum bv. trifolii WSM1325  

Data for CP001624  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001624.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001624_0176 CDS_186328-189036 78.2 1.2e-22 1
CP001624_0534 CDS_556441-554513 34.8 2.5e-10 1
CP001624_0280 CDS_302468-305470 33.5 5.8e-10 1
CP001624_0203 CDS_214737-217454 31.0 2.9e-09 1
CP001624_0027 CDS_25541-26917 30.5 4.2e-09 1
CP001624_0322 CDS_354608-352713 30.2 5.1e-09 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001624_0176 1/1 669 737 .. 1 87 [] 78.2 1.2e-22
CP001624_0534 1/1 281 347 .. 1 87 [] 34.8 2.5e-10
CP001624_0280 1/1 768 838 .. 1 87 [] 33.5 5.8e-10
CP001624_0203 1/1 393 459 .. 1 87 [] 31.0 2.9e-09
CP001624_0027 1/1 241 299 .. 1 87 [] 30.5 4.2e-09
CP001624_0322 2/2 402 472 .. 1 87 [] 29.1 1e-08

Alignments of top-scoring domains:
CP001624_0176: domain 1 of 1, from 669 to 737: score 78.2, E = 1.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l ++sH+L+TPL+aI+g+a +L++++ + ++ee+r
CP001624_0 669 LRSALLTSISHDLKTPLAAILGAAGTLRDYF-------ASMPEEDR- 707

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+t+ +e+erl+r i +lLd+++ie+g
CP001624_0 708 ----------SDLLSTVVDESERLNRFIANLLDMTKIESG 737

CP001624_0534: domain 1 of 1, from 281 to 347: score 34.8, E = 2.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L a++g +e+L++ + +++
CP001624_0 281 AIGQLTGGIAHDFNNLLMAVLGSLEILKK--------RMPQDLAL-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + + a+r +L +++L +sr ++
CP001624_0 318 ----------TSLVDNAMQGAQRGAALTQRMLAFSRRQEL 347

CP001624_0280: domain 1 of 1, from 768 to 838: score 33.5, E = 5.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ a+++HE ++PL++I+++a ++l+ + t+ + e++
CP001624_0 768 SLGQMSAAIAHEVNQPLSGIITNANTCLR-----MLAATPPDIETA- 808

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ +r+++r + i +l+ l ++
CP001624_0 809 ----------LETARRTIRDGNRATEVIARLRALFSKRNI 838

CP001624_0203: domain 1 of 1, from 393 to 459: score 31.0, E = 2.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ L +I+g+++lL + + + + +
CP001624_0 393 SIGKLTGGVAHDFNNLLQVISGNLQLLGK---------DVAESGRA- 429

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ +l ++er +rL ++lL + r +
CP001624_0 430 ----------KERISNALAAVERGSRLASQLLAFGRRQPL 459

CP001624_0027: domain 1 of 1, from 241 to 299: score 30.5, E = 4.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fl +++HELRTP++ + + + L
CP001624_0 241 RQERFLTDAAHELRTPIAILNTRIGSLPH------------------ 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++a rl L +++Ldl r+ +g
CP001624_0 270 ----------SSIKTDLLEDAARLAVLTEQMLDLQRLKQG 299

CP001624_0322: domain 2 of 2, from 402 to 472: score 29.1, E = 1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++HEL++PL+aIr +ae++ l+++++ + +
CP001624_0 402 TAGALSSSIAHELNQPLSAIRNNAEAASV-----LLRSANPDHGLI- 442

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+++ +r ++i++++ l + +++
CP001624_0 443 ----------QQILLDIQEDDQRAGDIISRMRGLLKKRSE 472


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-15 1 0|=
-14 3 0|==
-13 13 0|=======
-12 24 14|======*=====
-11 63 73|================================ *
-10 107 137|====================================================== *
-9 114 141|========================================================= *
-8 115 106|====================================================*=====
-7 79 66|================================*=======
-6 52 38|==================*=======
-5 21 21|==========*
-4 12 11|=====*
-3 3 5|==*
-2 5 3|=*=
-1 4 1|*=
0 0 0|
1 0 0|
> 2 8 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 28.0939
P(chi-square) = 0.0004567

Total sequences searched: 624

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: