Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

6 accessions found for Rhizobium leguminosarum bv. trifolii WSM1325  

Data for CP001624  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001624.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001624_0352 CDS_386950-388077 70.1 1.4e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001624_0352 1/1 181 267 .. 1 94 [] 70.1 1.4e-20

Alignments of top-scoring domains:
CP001624_0352: domain 1 of 1, from 181 to 267: score 70.1, E = 1.4e-20
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+ HRVKNNL +++S++ LQar ++d + L+ nRV +
CP001624_0 181 EVDHRVKNNLLTMASIVKLQARFTQDTVK-----KQTLMSVLNRVEA 222

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
++++++L + +d+ + d+++++++L+ +L + gvg+++i+L lDl
CP001624_0 223 LSTVQRKLFTLDDIARFDVADFIRELVTDLVS--GVGRNDIRLTLDL 267


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 3 0|=
-13 18 3|*=====
-12 41 40|=============*
-11 171 114|=====================================*===================
-10 159 147|================================================*====
-9 80 124|=========================== *
-8 62 83|===================== *
-7 29 49|========== *
-6 34 27|========*===
-5 10 14|====*
-4 7 7|==*
-3 3 4|=*
-2 1 2|*
> -1 6 -|==


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 62.6523
P(chi-square) = 1.403e-10

Total sequences searched: 624

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: