Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

6 accessions found for Rhizobium leguminosarum bv. trifolii WSM1325  

Data for CP001627  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001627.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001627_0221 CDS_231806-230517 58.9 1.6e-17 1
CP001627_0041 CDS_45427-44405 58.5 2.1e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001627_0221 1/1 200 263 .. 1 87 [] 58.9 1.6e-17
CP001627_0041 1/1 125 195 .. 1 87 [] 58.5 2.1e-17

Alignments of top-scoring domains:
CP001627_0221: domain 1 of 1, from 200 to 263: score 58.9, E = 1.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ ++sHELR PL+ +++++ +L+ s+ ++
CP001627_0 200 AQQRLFHDVSHELRSPLSRLQAAVGVLRQ------------SPAKL- 233

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++++re+erl++L+ ++L+l+r+ ag
CP001627_0 234 ----------GAMLDRMDREVERLDALVGEVLTLARLTAG 263

CP001627_0041: domain 1 of 1, from 125 to 195: score 58.5, E = 2.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a++sHEL+ PLtaIrg+aelL+++ + +++ qr
CP001627_0 125 YVRSFAAHVSHELKSPLTAIRGAAELLRDD-----DAEKPMTKVQR- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ i +a rl++L+++l++l+++e++
CP001627_0 166 ----------LHFLDNIVADAVRLDALLQRLRELAQAETP 195


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 1 0|=
-13 1 0|=
-12 4 6|==*
-11 9 32|===== *
-10 48 60|======================== *
-9 66 62|==============================*==
-8 57 46|======================*======
-7 40 29|==============*=====
-6 20 16|=======*==
-5 8 9|====*
-4 9 4|=*===
-3 4 2|*=
-2 2 1|*
> -1 6 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 26.5948
P(chi-square) = 0.0001724

Total sequences searched: 275

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: