Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Micrococcus luteus NCTC 2665  

Data for CP001628  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001628.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001628_2097 CDS_2364186-2362900 77.2 8.6e-22 1
CP001628_1395 CDS_1618645-1616822 69.5 1.3e-19 1
CP001628_0379 CDS_450807-449002 64.6 3.2e-18 1
CP001628_1745 CDS_1984872-1986041 60.5 4.7e-17 1
CP001628_0347 CDS_404202-405431 58.6 1.6e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001628_2097 1/1 164 230 .. 1 87 [] 77.2 8.6e-22
CP001628_1395 1/1 310 377 .. 1 87 [] 69.5 1.3e-19
CP001628_0379 1/1 266 333 .. 1 87 [] 64.6 3.2e-18
CP001628_1745 1/1 146 210 .. 1 87 [] 60.5 4.7e-17
CP001628_0347 1/1 150 216 .. 1 87 [] 58.6 1.6e-16

Alignments of top-scoring domains:
CP001628_2097: domain 1 of 1, from 164 to 230: score 77.2, E = 8.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rgyae++ + +els+
CP001628_2 164 QMRRFMADASHELRTPLASVRGYAEMIAM--------TEELSATG-- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l ++l +a+r+ L++d+L l+r+e+
CP001628_2 201 ----------RRSLGRVLFQADRMATLVDDMLLLERLESV 230

CP001628_1395: domain 1 of 1, from 310 to 377: score 69.5, E = 1.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHELRTPLt++r++a++L ++++ ++
CP001628_1 310 MQQRFVSDVSHELRTPLTTVRMAADVLYG-------SREDFDPVN-- 347

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +e ++++++r ++++ dlL+++r +ag
CP001628_1 348 ----------RRSTELLYHQVDRFQAMLTDLLEITRFDAG 377

CP001628_0379: domain 1 of 1, from 266 to 333: score 64.6, E = 3.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ ++sHELRTPL +Irg++el + + + + ee++
CP001628_0 266 KMRRFVQDASHELRTPLVTIRGFSELYRHG--------GLREEEDV- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++i++ea r+ rL++dlL+l+r++++
CP001628_0 304 ----------AAAMQRIESEATRMTRLVEDLLTLARLDEQ 333

CP001628_1745: domain 1 of 1, from 146 to 210: score 60.5, E = 4.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l++l+HELRTP++++ y e+L++++ ++++e++
CP001628_1 146 TRRRMLSDLAHELRTPVSVLTVYHEALQDGV-------SHWDEPT-- 183

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + +++ rl rL++d+ d sr e+g
CP001628_1 184 -------------GELMGEQLARLTRLVEDINDVSRVEEG 210

CP001628_0347: domain 1 of 1, from 150 to 216: score 58.6, E = 1.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ n+sHEL+TP+ aI++++e++ + ++ ++e +
CP001628_0 150 MRHDFVVNVSHELKTPVGAISLLSEAIGD---------AAEDDEAV- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++ e++rl +L++d+ ++sr++a
CP001628_0 187 ----------RRFAARLGVESRRLTALVQDIIEFSRLQAK 216


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-13 21 1|*==
-12 91 51|======*=====
-11 201 265|========================== *
-10 381 491|================================================ *
-9 416 507|==================================================== *
-8 408 380|===============================================*===
-7 299 239|=============================*========
-6 187 137|=================*======
-5 117 75|=========*=====
-4 43 40|====*=
-3 37 21|==*==
-2 11 11|=*
-1 9 5|*=
0 5 3|*
1 1 1|*
2 1 0|=
3 1 0|=
4 1 0|=
5 0 0|
6 0 0|
> 7 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 158.2476
P(chi-square) = 3.059e-28

Total sequences searched: 2236

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: