Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
35 projects found  

1 accessions found for Desulfomicrobium baculatum DSM 4028  

Data for CP001629  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001629.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001629_1559 CDS_1812809-1811547 72.6 3.6e-21 1
CP001629_2245 CDS_2633326-2634471 57.9 7.5e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001629_1559 1/1 215 282 .. 1 70 [] 72.6 3.6e-21
CP001629_2245 1/1 172 238 .. 1 70 [] 57.9 7.5e-17

Alignments of top-scoring domains:
CP001629_1559: domain 1 of 1, from 215 to 282: score 72.6, E = 3.6e-21
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa+I+RE+HD++gQ ++a++++l++++r + ++ ++ +++ e+
CP001629_1 215 ERAHISREIHDVLGQDMTAMNMGLHRLERSF--QDTGDARLAQVVEL 259

relarealaevRrllgdLRpaal<-*
r+l+ +l+ vRr+ ++LRp+ l
CP001629_1 260 RALVAGTLQTVRRISRELRPPML 282

CP001629_2245: domain 1 of 1, from 172 to 238: score 57.9, E = 7.5e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
ER+RIARELHD ++Q Ls+++ le++ pe+++ r+++
CP001629_2 172 ERQRIARELHDHLAQDLSLARADLERIG-----CGLPEggPWRAQAG 213

eirelarealaevRrllgdLRpaal<-*
i+e + +a++ +R+l+ +L p++l
CP001629_2 214 VIAERLGTAIRSIRDLAYGLLPPGL 238


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 23 0|===
-13 59 0|======
-12 93 38|===*=====
-11 163 314|=============== *
-10 469 730|=========================================== *
-9 606 829|======================================================== *
-8 510 639|=============================================== *
-7 449 402|====================================*====
-6 360 227|====================*============
-5 286 122|===========*==============
-4 175 63|=====*==========
-3 103 32|==*=======
-2 50 16|=*===
-1 41 8|*===
0 19 4|*=
1 13 2|*=
2 4 1|*
3 4 0|=
4 4 0|=
5 0 0|
6 2 0|=
7 0 0|
> 8 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1168.9032
P(chi-square) = 0

Total sequences searched: 3436

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: