Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Actinosynnema mirum DSM 43827  

Data for CP001630  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001630.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001630_6120 CDS_7379950-7378472 130.3 1.2e-36 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001630_6120 1/1 296 378 .. 1 94 [] 130.3 1.2e-36

Alignments of top-scoring domains:
CP001630_6120: domain 1 of 1, from 296 to 378: score 130.3, E = 1.2e-36
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQ+r++++ee+ +eaL Es++RV S
CP001630_6 296 EIHHRVKNNLQTVAALLRLQSRRTSSEEA-----REALAESVRRVTS 337

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+Al+HE L++s d ++vd++++++k++ + + ++ +s+ + +
CP001630_6 338 IALVHETLSMSVD-ERVDLDDVVDKVIPMMSDVAATESQVV-----V 378


Histogram of all scores:
score obs exp (one = represents 35 sequences)
----- --- ---
-15 15 0|=
-14 40 0|==
-13 147 43|=*===
-12 526 454|============*===
-11 2023 1264|====================================*=====================
-10 1548 1636|============================================= *
-9 980 1382|============================ *
-8 814 927|======================== *
-7 341 550|========== *
-6 256 306|========*
-5 91 165|=== *
-4 60 87|==*
-3 43 45|=*
-2 15 23|*
-1 6 12|*
0 2 6|*
1 3 3|*
2 1 1|*
3 2 0|=
4 1 0|=
> 5 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 987.2347
P(chi-square) = 0

Total sequences searched: 6916

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: