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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Acidimicrobium ferrooxidans DSM 10331  

Data for CP001631  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001631.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001631_0195 CDS_206803-205760 84.5 6.6e-24 1
CP001631_0536 CDS_561023-559344 83.3 1.4e-23 1
CP001631_1524 CDS_1660200-1657948 76.1 1.5e-21 1
CP001631_1058 CDS_1145804-1147189 65.0 2.1e-18 1
CP001631_1131 CDS_1226135-1224669 58.1 2e-16 1
CP001631_0677 CDS_710302-708731 57.4 3.1e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001631_0195 1/1 120 185 .. 1 87 [] 84.5 6.6e-24
CP001631_0536 1/1 256 322 .. 1 87 [] 83.3 1.4e-23
CP001631_1524 1/1 525 593 .. 1 87 [] 76.1 1.5e-21
CP001631_1058 1/1 231 295 .. 1 87 [] 65.0 2.1e-18
CP001631_1131 1/1 271 339 .. 1 87 [] 58.1 2e-16
CP001631_0677 1/1 283 348 .. 1 87 [] 57.4 3.1e-16

Alignments of top-scoring domains:
CP001631_0195: domain 1 of 1, from 120 to 185: score 84.5, E = 6.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ aI ++ae+L e + ++
CP001631_0 120 VRRDFVANVSHELKTPVGAIVLLAEALAQ----------EDEPTTA- 155

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i +e++rl rL++dlLdlsrie+g
CP001631_0 156 ----------QRLVQRIVDEGDRLARLVSDLLDLSRIEEG 185

CP001631_0536: domain 1 of 1, from 256 to 322: score 83.3, E = 1.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL++I+gy+el + + ++e +
CP001631_0 256 RLRQFIADVSHELRTPLASIQGYLELVDR---------SGYDPEIA- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ l++++r+++L++dlL l+r+++
CP001631_0 293 ----------QMAVQRSLEQSQRMRSLVEDLLSLARMDQS 322

CP001631_1524: domain 1 of 1, from 525 to 593: score 76.1, E = 1.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+ lsHELRTPLtaI gya+ Ll+ +e +
CP001631_1 525 LQVAFVQRLSHELRTPLTAITGYASSLLA------EDVRWDTESE-- 563

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++i e++rl rL+ dlLdls ie+g
CP001631_1 564 ----------RRFLQRIVAESQRLARLVGDLLDLSAIESG 593

CP001631_1058: domain 1 of 1, from 231 to 295: score 65.0, E = 2.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl ++sH+LRTPLt+Irg+ae++++ e ++
CP001631_1 231 RQTSFLLAISHDLRTPLTSIRGFAEAIED-------------GEVVQ 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p + + ++i+rea+r++rL+ dl+ l+r+ea
CP001631_1 265 P---------AHAASVIQREAQRIERLLADLMSLARLEAD 295

CP001631_1131: domain 1 of 1, from 271 to 339: score 58.1, E = 2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l+++sH+L TPL++I +++++ +++ ++ + ++
CP001631_1 271 WRLSLLRTVSHDLLTPLASIETAVSTVAAFG-------AAIAPSDH- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+let+l + +r + L++dlLd sr+eag
CP001631_1 310 ----------DELLETALAQCRRASTLVEDLLDVSRLEAG 339

CP001631_0677: domain 1 of 1, from 283 to 348: score 57.4, E = 3.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+ ++sHEL+ PL+a+r+++e+ ++l +e +
CP001631_0 283 REKQFIQDASHELKSPLSALRTTLEV------------GALHPEIT- 316

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e ++++l+ea+r++rLi+ lL l+r+e+g
CP001631_0 317 --------DWDESTQIALSEADRMQRLIESLLLLARAETG 348


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 4 0|=
-13 13 1|*=
-12 44 44|======*
-11 170 232|========================= *
-10 304 431|============================================ *
-9 402 446|==========================================================*
-8 350 333|===============================================*==
-7 238 210|=============================*====
-6 190 121|=================*==========
-5 106 66|=========*======
-4 50 35|====*===
-3 44 18|==*====
-2 18 9|=*=
-1 11 5|*=
0 8 2|*=
1 4 1|*
> 2 8 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 179.4053
P(chi-square) = 1.36e-32

Total sequences searched: 1964

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: