Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for CP001631  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001631.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001631_0345 CDS_360734-362161 99.1 2.5e-28 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001631_0345 1/1 277 340 .. 1 70 [. 99.1 2.5e-28

Alignments of top-scoring domains:
CP001631_0345: domain 1 of 1, from 277 to 340: score 99.1, E = 2.5e-28
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ+ISSLLrLQar+ d+e+ +aL E+++R++S
CP001631_0 277 EVHHRVKNNLQTISSLLRLQARRLADQEA-----VAALAEAERRIRS 318

mAliHEeLYksedldtvdfseYl<-*
+Al+HE L++ + ++v+++e+l
CP001631_0 319 IALVHEFLSRDVS-EQVEVDEVL 340


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 2 0|=
-14 14 0|==
-13 38 12|=*==
-12 117 129|============*
-11 544 359|===================================*===================
-10 412 464|========================================== *
-9 334 392|================================== *
-8 264 263|==========================*
-7 84 156|========= *
-6 92 87|========*=
-5 30 46|=== *
-4 16 24|==*
-3 10 13|=*
-2 2 6|*
> -1 5 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 208.4496
P(chi-square) = 5.265e-309

Total sequences searched: 1964

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: